miRNA display CGI


Results 101 - 120 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 11842 0.67 0.399956
Target:  5'- uCGCCGCgaccuccGaCCGCCGgcgacgaccgcCCGCC-CCGCGa -3'
miRNA:   3'- -GCGGCGa------C-GGCGGC-----------GGCGGcGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 82688 0.67 0.399956
Target:  5'- aCGCCGUUcgcccggcgcGCCGagacgCGCCGaggaCGCCGCGc -3'
miRNA:   3'- -GCGGCGA----------CGGCg----GCGGCg---GCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 83953 0.67 0.399956
Target:  5'- gGaCCGCcuggGCCGCCuggagcGCCuggaCCGCCGCGa -3'
miRNA:   3'- gC-GGCGa---CGGCGG------CGGc---GGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 107759 0.67 0.399956
Target:  5'- gCGCCGCUGgCUGgaGCgCGCuCGCC-CGGc -3'
miRNA:   3'- -GCGGCGAC-GGCggCG-GCG-GCGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 84444 0.67 0.399956
Target:  5'- uGCCGaacgagggcCUGCCGCCGaaagCGCCGUCucCGGc -3'
miRNA:   3'- gCGGC---------GACGGCGGCg---GCGGCGGc-GCC- -5'
10751 3' -68.6 NC_002794.1 + 20451 0.67 0.392347
Target:  5'- cCGCUGgaGCCGCCuCUGCgGCCcCGa -3'
miRNA:   3'- -GCGGCgaCGGCGGcGGCGgCGGcGCc -5'
10751 3' -68.6 NC_002794.1 + 152228 0.67 0.392347
Target:  5'- aCGUCGCgcgccacGUCGCgCGCacCGUCGCCGuCGGa -3'
miRNA:   3'- -GCGGCGa------CGGCG-GCG--GCGGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 187846 0.67 0.392347
Target:  5'- gCGCCGaggGCU-CUGCCcaGCCGCgCGCGGc -3'
miRNA:   3'- -GCGGCga-CGGcGGCGG--CGGCG-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 105700 0.67 0.391592
Target:  5'- cCGCCGUcGCCuCCGCUcgaggcgaucgcgGCgGCCGuCGGg -3'
miRNA:   3'- -GCGGCGaCGGcGGCGG-------------CGgCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 45186 0.67 0.38933
Target:  5'- uGCCGauguuguaaaUGggaaagagggucaCGCCGCCGCCGCC-CGGc -3'
miRNA:   3'- gCGGCg---------ACg------------GCGGCGGCGGCGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 14527 0.67 0.384833
Target:  5'- gCGCCGCUcgGCCacggcgcucucGCCcCCGUCGaCgCGCGGg -3'
miRNA:   3'- -GCGGCGA--CGG-----------CGGcGGCGGC-G-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 50585 0.67 0.384833
Target:  5'- gCGCgGCgGCUggGUgGCCGgCGCCGgGGg -3'
miRNA:   3'- -GCGgCGaCGG--CGgCGGCgGCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 57873 0.67 0.384833
Target:  5'- gCGgCGCUGCacaGCUGcCCGUCGCCuGCu- -3'
miRNA:   3'- -GCgGCGACGg--CGGC-GGCGGCGG-CGcc -5'
10751 3' -68.6 NC_002794.1 + 68825 0.67 0.384833
Target:  5'- aGaCgGCga-CGCCGCCGgCGCuCGCGGu -3'
miRNA:   3'- gC-GgCGacgGCGGCGGCgGCG-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 180681 0.67 0.384833
Target:  5'- uCGCCG--GCCGCUcCCGgCGCCcgGCGGg -3'
miRNA:   3'- -GCGGCgaCGGCGGcGGCgGCGG--CGCC- -5'
10751 3' -68.6 NC_002794.1 + 130384 0.67 0.384833
Target:  5'- -aCCGCUgagGCCGCCugGCUGUcggaCGCCGCGa -3'
miRNA:   3'- gcGGCGA---CGGCGG--CGGCG----GCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 143691 0.67 0.377416
Target:  5'- uGCCGCaggGUCG-CGuuGCCcaCCGCGGg -3'
miRNA:   3'- gCGGCGa--CGGCgGCggCGGc-GGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 131032 0.67 0.377416
Target:  5'- uGCgGC-GCgGCCgGCUGCCGCCGauGu -3'
miRNA:   3'- gCGgCGaCGgCGG-CGGCGGCGGCgcC- -5'
10751 3' -68.6 NC_002794.1 + 32700 0.67 0.377416
Target:  5'- gCGUCGCggGCgacuCGCCGCCacCCGUCgGCGGg -3'
miRNA:   3'- -GCGGCGa-CG----GCGGCGGc-GGCGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 44249 0.67 0.377416
Target:  5'- gGCuCGgUGCCggGCgGCUcgGCCGCCGgGGa -3'
miRNA:   3'- gCG-GCgACGG--CGgCGG--CGGCGGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.