miRNA display CGI


Results 21 - 40 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 15115 0.71 0.217818
Target:  5'- gCGCCGgaGaCCGaCCGCCGUguucuacgugaauuCGCuCGCGGa -3'
miRNA:   3'- -GCGGCgaC-GGC-GGCGGCG--------------GCG-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 16275 0.66 0.459064
Target:  5'- gCGCCGC-GCC-CCuguuggcggagucuaGCCugGCgGCCGCGGc -3'
miRNA:   3'- -GCGGCGaCGGcGG---------------CGG--CGgCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 16487 0.82 0.040146
Target:  5'- cCGCCGCcuccGCCGCCaCCGCCGCCGCc- -3'
miRNA:   3'- -GCGGCGa---CGGCGGcGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 16568 0.82 0.038227
Target:  5'- cCGCCGCcGCCGCCaccaccGCCGCCGCCGUc- -3'
miRNA:   3'- -GCGGCGaCGGCGG------CGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 16809 0.77 0.081074
Target:  5'- aCGCC-CaGCCGCCcCCGCCGCCGCa- -3'
miRNA:   3'- -GCGGcGaCGGCGGcGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 16877 0.76 0.093108
Target:  5'- cCGCCGCggcagcaaccaCCGCCGCCGCgacaGCCGCGa -3'
miRNA:   3'- -GCGGCGac---------GGCGGCGGCGg---CGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 16922 0.72 0.179368
Target:  5'- cCGCCGaCUGUCGUCGgCGCCgaGCCGCc- -3'
miRNA:   3'- -GCGGC-GACGGCGGCgGCGG--CGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 17215 0.76 0.100454
Target:  5'- cCGCCGCcaccaCCGCCGCCaCCGCCGCc- -3'
miRNA:   3'- -GCGGCGac---GGCGGCGGcGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 17257 0.69 0.289992
Target:  5'- gGCgGCgacccgGCUcgucacccggGCaCGCCGCCGCCGaCGGu -3'
miRNA:   3'- gCGgCGa-----CGG----------CG-GCGGCGGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 17405 0.7 0.244551
Target:  5'- cCGCCGaaGCCaCCGCgGCCaUCGCGGu -3'
miRNA:   3'- -GCGGCgaCGGcGGCGgCGGcGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 17434 0.66 0.455749
Target:  5'- -uCCGC-GCCGCCGgCGCuCGggcCCGCGa -3'
miRNA:   3'- gcGGCGaCGGCGGCgGCG-GC---GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 17485 0.66 0.46406
Target:  5'- aCGCCGCguuUGCgauCGCCGaCGCCgGCCGagauCGGc -3'
miRNA:   3'- -GCGGCG---ACG---GCGGCgGCGG-CGGC----GCC- -5'
10751 3' -68.6 NC_002794.1 + 17647 0.86 0.020153
Target:  5'- cCGCCGCgGCCGCCGCCaCCGCCGCc- -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGcGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 18051 0.68 0.334967
Target:  5'- cCGCCGgauCUGCUGCaCGCCGCCuGuCUGUGc -3'
miRNA:   3'- -GCGGC---GACGGCG-GCGGCGG-C-GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 18246 0.67 0.407658
Target:  5'- gCGCgCGCgGCCGaCCGgCGaCCGCgagaugCGCGGc -3'
miRNA:   3'- -GCG-GCGaCGGC-GGCgGC-GGCG------GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 18668 0.81 0.047631
Target:  5'- uCGCCGCUuccucgGCUGCCGCCGCCGUCuccggcacgGCGGc -3'
miRNA:   3'- -GCGGCGA------CGGCGGCGGCGGCGG---------CGCC- -5'
10751 3' -68.6 NC_002794.1 + 18721 0.66 0.420963
Target:  5'- aCGUCGgaGCCGacgaGCCGCCccaacgccacgacgGCCgGCGGc -3'
miRNA:   3'- -GCGGCgaCGGCgg--CGGCGG--------------CGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 18856 0.72 0.187637
Target:  5'- gCGCCGUcGCCGaUCGCCaacgccaccgacGCCGgCGCGGa -3'
miRNA:   3'- -GCGGCGaCGGC-GGCGG------------CGGCgGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 19255 0.67 0.370094
Target:  5'- uGCCGaccgGCCGCgGCCcCCGUgGCGc -3'
miRNA:   3'- gCGGCga--CGGCGgCGGcGGCGgCGCc -5'
10751 3' -68.6 NC_002794.1 + 19301 0.7 0.244551
Target:  5'- uCGUCGC-GUCGCUGaCCGCCcacGCCGCGc -3'
miRNA:   3'- -GCGGCGaCGGCGGC-GGCGG---CGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.