miRNA display CGI


Results 41 - 60 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 19342 0.68 0.32824
Target:  5'- gCGCCGgUcacccccucGCCGcCCGCC-CCGCC-CGGa -3'
miRNA:   3'- -GCGGCgA---------CGGC-GGCGGcGGCGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 19512 0.68 0.321615
Target:  5'- gGUCGC-GCCGCuCGgagCGCCGgCGCGGc -3'
miRNA:   3'- gCGGCGaCGGCG-GCg--GCGGCgGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 19883 0.68 0.321615
Target:  5'- -cCUGC-GUgGCCGaCCGCUGCCGCGa -3'
miRNA:   3'- gcGGCGaCGgCGGC-GGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 20207 0.69 0.296116
Target:  5'- aCGCCGCa-CCGCCGaCCGCCauggcucuCCGCGc -3'
miRNA:   3'- -GCGGCGacGGCGGC-GGCGGc-------GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 20451 0.67 0.392347
Target:  5'- cCGCUGgaGCCGCCuCUGCgGCCcCGa -3'
miRNA:   3'- -GCGGCgaCGGCGGcGGCGgCGGcGCc -5'
10751 3' -68.6 NC_002794.1 + 21372 0.66 0.431312
Target:  5'- aCGCgGCgGCgGCCGCCGUCucuuCCuCGGa -3'
miRNA:   3'- -GCGgCGaCGgCGGCGGCGGc---GGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 21948 0.72 0.205184
Target:  5'- uCGUCGaagGCCGUCgGCCGCUcCCGCGGc -3'
miRNA:   3'- -GCGGCga-CGGCGG-CGGCGGcGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 23240 0.69 0.289992
Target:  5'- gGgCGUUGCCGUgcgaGCCuCCGCCGcCGGa -3'
miRNA:   3'- gCgGCGACGGCGg---CGGcGGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 23579 0.71 0.21448
Target:  5'- cCGCCGCcacCCGCCGauccaccgauCCGCCGacccgaccCCGCGGg -3'
miRNA:   3'- -GCGGCGac-GGCGGC----------GGCGGC--------GGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 23693 0.68 0.355746
Target:  5'- gCGCCGCcgagGCC-CCGaagcgucccgaaCCGCgCGCgGCGGg -3'
miRNA:   3'- -GCGGCGa---CGGcGGC------------GGCG-GCGgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 23993 0.7 0.239306
Target:  5'- cCGUCGCU-CCguccgacggGCCGCCGUCaCCGCGGc -3'
miRNA:   3'- -GCGGCGAcGG---------CGGCGGCGGcGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 26095 0.69 0.278042
Target:  5'- gCGCCGacgGCC-CCGgCGaUCGCCGUGGg -3'
miRNA:   3'- -GCGGCga-CGGcGGCgGC-GGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 28675 0.85 0.021704
Target:  5'- cCGCCGCcggugGCCGUCGCCGCCGCCGUu- -3'
miRNA:   3'- -GCGGCGa----CGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 28707 0.86 0.01966
Target:  5'- uGCUGCUGCCGUCGUCGCCGCCGUc- -3'
miRNA:   3'- gCGGCGACGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 30925 0.68 0.362871
Target:  5'- uCGCUcuccagGCUGCgC-CCGCCG-CGCCGCGa -3'
miRNA:   3'- -GCGG------CGACG-GcGGCGGCgGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 31005 0.68 0.324253
Target:  5'- uCGCCGgacGUCGCCGCCGCCuccuccgagcacaggGCCGacagauaGGg -3'
miRNA:   3'- -GCGGCga-CGGCGGCGGCGG---------------CGGCg------CC- -5'
10751 3' -68.6 NC_002794.1 + 31345 0.66 0.455749
Target:  5'- cCGCCGUguCCGCCGcCCGCuCGUCGaaGu -3'
miRNA:   3'- -GCGGCGacGGCGGC-GGCG-GCGGCgcC- -5'
10751 3' -68.6 NC_002794.1 + 31401 0.72 0.183462
Target:  5'- cCGCCGC-GcCCGCCGCgC-CCGCCGCc- -3'
miRNA:   3'- -GCGGCGaC-GGCGGCG-GcGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 32292 0.86 0.020153
Target:  5'- aCGCCGCcGCCGCCGCgGCgGCCGCGc -3'
miRNA:   3'- -GCGGCGaCGGCGGCGgCGgCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 32564 0.67 0.415453
Target:  5'- aGCCGCggauaGUCGCgCGCgGCggUGCCGgGGc -3'
miRNA:   3'- gCGGCGa----CGGCG-GCGgCG--GCGGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.