miRNA display CGI


Results 61 - 80 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 32700 0.67 0.377416
Target:  5'- gCGUCGCggGCgacuCGCCGCCacCCGUCgGCGGg -3'
miRNA:   3'- -GCGGCGa-CG----GCGGCGGc-GGCGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 34038 0.7 0.272216
Target:  5'- aGCCGcCUGCUGCCggGCCGgC-CCGCGc -3'
miRNA:   3'- gCGGC-GACGGCGG--CGGCgGcGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 34071 0.7 0.260859
Target:  5'- cCGCCGUUcCCGCCgGCgGCCgggcaGCCGuCGGg -3'
miRNA:   3'- -GCGGCGAcGGCGG-CGgCGG-----CGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 34248 0.77 0.089203
Target:  5'- gCGCgGCUGCCGCCGCagGCgGaCCGCGc -3'
miRNA:   3'- -GCGgCGACGGCGGCGg-CGgC-GGCGCc -5'
10751 3' -68.6 NC_002794.1 + 34703 0.68 0.362871
Target:  5'- cCGCCaGCagGcCCGCCGgCGCCacgaGgCGCGGg -3'
miRNA:   3'- -GCGG-CGa-C-GGCGGCgGCGG----CgGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 34814 0.68 0.341106
Target:  5'- gGCCGC-GCgacaccacccccuCGCCGgCGCCGgaGCGGg -3'
miRNA:   3'- gCGGCGaCG-------------GCGGCgGCGGCggCGCC- -5'
10751 3' -68.6 NC_002794.1 + 34864 0.77 0.091353
Target:  5'- gCGCCGCgGgCGCCGCggaCGCCGCgaaCGCGGa -3'
miRNA:   3'- -GCGGCGaCgGCGGCG---GCGGCG---GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 35767 0.66 0.431312
Target:  5'- aCGUCGCggcaCCGUCGCCGgCGUCGUc- -3'
miRNA:   3'- -GCGGCGac--GGCGGCGGCgGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 36135 0.66 0.432114
Target:  5'- cCGCCGguagucuuucuccucCU-CCGCCGCCGCCucccccccacccgcGCCcCGGg -3'
miRNA:   3'- -GCGGC---------------GAcGGCGGCGGCGG--------------CGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 36516 0.68 0.341793
Target:  5'- gGCCaGCgUGUCGcCCGUCGCCucccaccaguGCCGCGa -3'
miRNA:   3'- gCGG-CG-ACGGC-GGCGGCGG----------CGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 36560 0.68 0.348023
Target:  5'- cCGuCCGCUGCagacacgCGCCGCCGa-GCagGCGGu -3'
miRNA:   3'- -GC-GGCGACG-------GCGGCGGCggCGg-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 36779 0.69 0.278042
Target:  5'- aGCUGUaGCCgGCCGCCGUguaCGCCGaGGu -3'
miRNA:   3'- gCGGCGaCGG-CGGCGGCG---GCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 37408 0.67 0.407658
Target:  5'- gCGcCCGCUGCaGCCGguccagCGCCGuCCGCa- -3'
miRNA:   3'- -GC-GGCGACGgCGGCg-----GCGGC-GGCGcc -5'
10751 3' -68.6 NC_002794.1 + 37734 0.71 0.21448
Target:  5'- aGCgGCggcGCCGCCGgCGgCGgCGCGGc -3'
miRNA:   3'- gCGgCGa--CGGCGGCgGCgGCgGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 37764 0.7 0.239306
Target:  5'- gCGCCgGCgggagcgGCCGUCGUCGUCGgCCGCaGGc -3'
miRNA:   3'- -GCGG-CGa------CGGCGGCGGCGGC-GGCG-CC- -5'
10751 3' -68.6 NC_002794.1 + 37902 0.7 0.254779
Target:  5'- gGCgGCaGCgGCuCGCCGgccucaacgucaaCCGCCGCGGc -3'
miRNA:   3'- gCGgCGaCGgCG-GCGGC-------------GGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 38444 0.7 0.239306
Target:  5'- gGCCGgaCUGaggaGCCGgCGCgGCCGCGGc -3'
miRNA:   3'- gCGGC--GACgg--CGGCgGCGgCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 38515 0.84 0.028751
Target:  5'- cCGCCGCcuccgcgaucccagGUCGCCGCCGCCGCCGCc- -3'
miRNA:   3'- -GCGGCGa-------------CGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 38699 0.71 0.229099
Target:  5'- cCGCCGC-GCCGUcgagCGCCccgGCCGCCGaaauGGg -3'
miRNA:   3'- -GCGGCGaCGGCG----GCGG---CGGCGGCg---CC- -5'
10751 3' -68.6 NC_002794.1 + 40332 0.66 0.44752
Target:  5'- cCGCCGCgcggacgcGCCaCCGgCGgCGCCGCc- -3'
miRNA:   3'- -GCGGCGa-------CGGcGGCgGCgGCGGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.