miRNA display CGI


Results 81 - 100 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 40503 0.73 0.152927
Target:  5'- uCGCCGCUcgagucacgGCCGCCGaCG-CGCCGaCGGg -3'
miRNA:   3'- -GCGGCGA---------CGGCGGCgGCgGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 40584 0.7 0.255327
Target:  5'- gGCCGCggGCCcucuccuccgaGUCGUCGCCGgcguccgacuCCGCGGa -3'
miRNA:   3'- gCGGCGa-CGG-----------CGGCGGCGGC----------GGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 41205 0.7 0.266489
Target:  5'- aCGgCGCUGCUGCCaCCgGCCuCCGgGGa -3'
miRNA:   3'- -GCgGCGACGGCGGcGG-CGGcGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 41242 0.78 0.075448
Target:  5'- aCGCCGCgGCCGCCGacgccggcggcCCGUCGUCGCGc -3'
miRNA:   3'- -GCGGCGaCGGCGGC-----------GGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 42197 0.75 0.115721
Target:  5'- gGCCGaaacucGCCGCCGCCGguCUGCCGCuGGa -3'
miRNA:   3'- gCGGCga----CGGCGGCGGC--GGCGGCG-CC- -5'
10751 3' -68.6 NC_002794.1 + 42261 0.71 0.234156
Target:  5'- aGcCCGCU-CCGCCcucgccCCGCCGCCGCu- -3'
miRNA:   3'- gC-GGCGAcGGCGGc-----GGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 42654 0.71 0.224134
Target:  5'- gGCCGaaGCCGaCGgCGCCGCCGgcaCGGg -3'
miRNA:   3'- gCGGCgaCGGCgGCgGCGGCGGC---GCC- -5'
10751 3' -68.6 NC_002794.1 + 44249 0.67 0.377416
Target:  5'- gGCuCGgUGCCggGCgGCUcgGCCGCCGgGGa -3'
miRNA:   3'- gCG-GCgACGG--CGgCGG--CGGCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 44529 0.74 0.146048
Target:  5'- uGuCCGCgagcgcGCCGUCGUCGUCGCCgGCGGc -3'
miRNA:   3'- gC-GGCGa-----CGGCGGCGGCGGCGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 44701 0.7 0.248279
Target:  5'- cCGCCGCccgGCCGCgaccgcggcgacguCgGCCGgCGCCGcCGGa -3'
miRNA:   3'- -GCGGCGa--CGGCG--------------G-CGGCgGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 45186 0.67 0.38933
Target:  5'- uGCCGauguuguaaaUGggaaagagggucaCGCCGCCGCCGCC-CGGc -3'
miRNA:   3'- gCGGCg---------ACg------------GCGGCGGCGGCGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 45893 0.66 0.431312
Target:  5'- cCGaCCGa-GCC-CCGcCCGCCGCCGgcacCGGg -3'
miRNA:   3'- -GC-GGCgaCGGcGGC-GGCGGCGGC----GCC- -5'
10751 3' -68.6 NC_002794.1 + 46198 0.66 0.46406
Target:  5'- -aCCGC-GCuCGCuCGCCGCCGUUcCGGc -3'
miRNA:   3'- gcGGCGaCG-GCG-GCGGCGGCGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 46315 0.77 0.087101
Target:  5'- gCGCgGCgGCgaCGgCGCCGUCGCCGCGGa -3'
miRNA:   3'- -GCGgCGaCG--GCgGCGGCGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 47126 0.7 0.272216
Target:  5'- -uCCGCUGCCGCCGaCUcuucgGCCGgacgcacaCCGUGGa -3'
miRNA:   3'- gcGGCGACGGCGGC-GG-----CGGC--------GGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 47409 0.76 0.105319
Target:  5'- aGCCGCcGUCGgCGCCGUCGC-GCGGa -3'
miRNA:   3'- gCGGCGaCGGCgGCGGCGGCGgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 47947 0.7 0.249891
Target:  5'- gCGCCGCgcgucCCGgCGCCGgcugggcgaCCGCCGCGc -3'
miRNA:   3'- -GCGGCGac---GGCgGCGGC---------GGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 48082 0.7 0.272216
Target:  5'- aGCgGgaGCaGCCGCCGCuCGCCgGCGu -3'
miRNA:   3'- gCGgCgaCGgCGGCGGCG-GCGG-CGCc -5'
10751 3' -68.6 NC_002794.1 + 48163 0.72 0.200668
Target:  5'- aGCgGC-GCCGCuucaCGCCGCUGCaGCGGa -3'
miRNA:   3'- gCGgCGaCGGCG----GCGGCGGCGgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 48586 0.67 0.407658
Target:  5'- aGCCGgaGgaGCgGCgCGUCGCCGuCGGc -3'
miRNA:   3'- gCGGCgaCggCGgCG-GCGGCGGC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.