miRNA display CGI


Results 1 - 20 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 195562 0.71 0.21448
Target:  5'- aGCCGCcccgaGCCGCC-CCGaCCGaCCGcCGGa -3'
miRNA:   3'- gCGGCGa----CGGCGGcGGC-GGC-GGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 195312 0.67 0.415453
Target:  5'- cCGCCGC-GUCGCCuUCGCCGaguaGUGGc -3'
miRNA:   3'- -GCGGCGaCGGCGGcGGCGGCgg--CGCC- -5'
10751 3' -68.6 NC_002794.1 + 195197 0.69 0.315089
Target:  5'- gCGCCGUcagGuCCaGCC-CCGCCaGCUGCGGc -3'
miRNA:   3'- -GCGGCGa--C-GG-CGGcGGCGG-CGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 194525 0.71 0.218779
Target:  5'- uGCCGCcgGCCcagcagcGCCGCCaGCaCGCCcgcGCGGa -3'
miRNA:   3'- gCGGCGa-CGG-------CGGCGG-CG-GCGG---CGCC- -5'
10751 3' -68.6 NC_002794.1 + 194397 0.67 0.414669
Target:  5'- gCGCCGCccgGUCGuucgcguCCGCCaCCGCCGUa- -3'
miRNA:   3'- -GCGGCGa--CGGC-------GGCGGcGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 194070 0.78 0.073657
Target:  5'- gCGCCGCcuucGUCGCCGCCaCCGCCGUGu -3'
miRNA:   3'- -GCGGCGa---CGGCGGCGGcGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 194043 0.89 0.010577
Target:  5'- cCGCCGCcGCCGCCGCCGCCGCCGa-- -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGCGGCGGCgcc -5'
10751 3' -68.6 NC_002794.1 + 194010 0.79 0.062216
Target:  5'- uCGCCuucGCgGCCGCCGCCGCCGgCGCc- -3'
miRNA:   3'- -GCGG---CGaCGGCGGCGGCGGCgGCGcc -5'
10751 3' -68.6 NC_002794.1 + 193987 0.66 0.44752
Target:  5'- nGCCGCUaCCGCCGCC-CC-CgGCu- -3'
miRNA:   3'- gCGGCGAcGGCGGCGGcGGcGgCGcc -5'
10751 3' -68.6 NC_002794.1 + 193962 0.81 0.045363
Target:  5'- cCGCCGCcaCCGCCGUCaCCGCCGCGGc -3'
miRNA:   3'- -GCGGCGacGGCGGCGGcGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 193883 0.68 0.362871
Target:  5'- -cCCGC-GUCGCCcuccaCCGCCGCCGCc- -3'
miRNA:   3'- gcGGCGaCGGCGGc----GGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 193808 0.66 0.46406
Target:  5'- gCGcCCGCUcGuCUGgCGCCGaCgCGUCGCGGc -3'
miRNA:   3'- -GC-GGCGA-C-GGCgGCGGC-G-GCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 193716 0.68 0.32824
Target:  5'- uCGcCCGCc-CCGCCGguguccUCGCCGCCcGCGGc -3'
miRNA:   3'- -GC-GGCGacGGCGGC------GGCGGCGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 193399 0.77 0.081074
Target:  5'- cCGCCucgcGCUcGCCuCCGCCGCCGCCGCc- -3'
miRNA:   3'- -GCGG----CGA-CGGcGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 193365 0.67 0.415453
Target:  5'- aGCCGgUGCCacggGCCGCgcuccuCGCCGUCGUn- -3'
miRNA:   3'- gCGGCgACGG----CGGCG------GCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 193289 0.7 0.249891
Target:  5'- gCGCCGgUaGUCGCCGuCCGCuccgCGCCGCa- -3'
miRNA:   3'- -GCGGCgA-CGGCGGC-GGCG----GCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 193033 0.7 0.246676
Target:  5'- -uCUGCUGCCGCacguacucgcacagCGCCcgcaccggcugcggGCCGUCGCGGg -3'
miRNA:   3'- gcGGCGACGGCG--------------GCGG--------------CGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 192639 0.76 0.098101
Target:  5'- gGCCGCU-CCaGCCG-CGCCGCCGCGc -3'
miRNA:   3'- gCGGCGAcGG-CGGCgGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 192420 0.7 0.260859
Target:  5'- aCGCCGCgacggGuCCGCgGCCgGCgCGUCGCGc -3'
miRNA:   3'- -GCGGCGa----C-GGCGgCGG-CG-GCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 192386 0.67 0.407658
Target:  5'- gGCUGaCcGCCaCCGCCG-CGCCGgGGu -3'
miRNA:   3'- gCGGC-GaCGGcGGCGGCgGCGGCgCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.