miRNA display CGI


Results 21 - 40 of 478 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 192359 0.76 0.105319
Target:  5'- gGCCuCcGCCGCCGCCGaCCGagCGCGGg -3'
miRNA:   3'- gCGGcGaCGGCGGCGGC-GGCg-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 192312 0.83 0.033816
Target:  5'- uCGuCCGCgcucGCCGCCGCCGCCGCuuccuccucuuCGCGGa -3'
miRNA:   3'- -GC-GGCGa---CGGCGGCGGCGGCG-----------GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 192237 0.8 0.053794
Target:  5'- uCGgCGCUGCCGUCGCCGaCGgCGCGGu -3'
miRNA:   3'- -GCgGCGACGGCGGCGGCgGCgGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 192133 0.83 0.03065
Target:  5'- uGCUGCUGuuGCUGCUGCCGgCGCGGu -3'
miRNA:   3'- gCGGCGACggCGGCGGCGGCgGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 192097 0.81 0.047631
Target:  5'- uGCUGCUGCUGCUGCUGCUGCUGCu- -3'
miRNA:   3'- gCGGCGACGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 192073 0.81 0.047631
Target:  5'- uGCUGCUGCUGCUGCUGCUGCUGCu- -3'
miRNA:   3'- gCGGCGACGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 192049 0.81 0.047631
Target:  5'- gGCUGCUGCUGCUGCUGCUGCUGCu- -3'
miRNA:   3'- gCGGCGACGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 192019 0.68 0.34872
Target:  5'- gGCCGCgGCUGCUGUuucUGUgGCgGCGGc -3'
miRNA:   3'- gCGGCGaCGGCGGCG---GCGgCGgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 191571 0.73 0.163797
Target:  5'- aCGCCGCU-UCGCCGaaGCUGCCGCc- -3'
miRNA:   3'- -GCGGCGAcGGCGGCggCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 191188 0.66 0.472449
Target:  5'- gCGCuCGCccgGCCGcCCGcCCGCuCGCuCGCu- -3'
miRNA:   3'- -GCG-GCGa--CGGC-GGC-GGCG-GCG-GCGcc -5'
10751 3' -68.6 NC_002794.1 + 190726 0.68 0.344552
Target:  5'- aGCCGgaGacgcagcgcCCGCCGCCGUCucgacgggggcggcgGCCGCGc -3'
miRNA:   3'- gCGGCgaC---------GGCGGCGGCGG---------------CGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 190663 0.71 0.209787
Target:  5'- aCGUCGC-GcCCGCCG-CGCCGCCG-GGu -3'
miRNA:   3'- -GCGGCGaC-GGCGGCgGCGGCGGCgCC- -5'
10751 3' -68.6 NC_002794.1 + 190523 0.68 0.341793
Target:  5'- aGCCGCgUGCCGaUCGUCGuCCaCCaGCGGu -3'
miRNA:   3'- gCGGCG-ACGGC-GGCGGC-GGcGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 190107 0.66 0.423338
Target:  5'- aCGCC-CcGCCGuCCG-CGCCGaaGCGGu -3'
miRNA:   3'- -GCGGcGaCGGC-GGCgGCGGCggCGCC- -5'
10751 3' -68.6 NC_002794.1 + 189887 0.73 0.175356
Target:  5'- nGcCCGCUcggGcCCGCCGUcagCGCCGCCGCGc -3'
miRNA:   3'- gC-GGCGA---C-GGCGGCG---GCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 189861 0.74 0.149451
Target:  5'- aGCCGUcGgCGUCGUCGCCGCCGacCGGc -3'
miRNA:   3'- gCGGCGaCgGCGGCGGCGGCGGC--GCC- -5'
10751 3' -68.6 NC_002794.1 + 189379 0.7 0.246676
Target:  5'- aGCCGCUcGCCGCUgugcucggccacguaGuCCGCCaggGCCaGCGGg -3'
miRNA:   3'- gCGGCGA-CGGCGG---------------C-GGCGG---CGG-CGCC- -5'
10751 3' -68.6 NC_002794.1 + 189024 0.73 0.175356
Target:  5'- gGCCaGgaGCCGCuCGaCCGCCaGCgGCGGg -3'
miRNA:   3'- gCGG-CgaCGGCG-GC-GGCGG-CGgCGCC- -5'
10751 3' -68.6 NC_002794.1 + 188590 0.69 0.296116
Target:  5'- cCGCCGCU-CCaCgGCCGCCuugcGCCGCaGGu -3'
miRNA:   3'- -GCGGCGAcGGcGgCGGCGG----CGGCG-CC- -5'
10751 3' -68.6 NC_002794.1 + 188401 0.76 0.095801
Target:  5'- uCGCCGCagacggGaCCGCCGCCGCaacuGCCGCaGGu -3'
miRNA:   3'- -GCGGCGa-----C-GGCGGCGGCGg---CGGCG-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.