miRNA display CGI


Results 41 - 60 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 188333 0.78 0.070196
Target:  5'- uCGCCGCcGCCGgCGgCGCCGUCGCGc -3'
miRNA:   3'- -GCGGCGaCGGCgGCgGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 188294 0.66 0.439373
Target:  5'- gCGCCGCgcGCCGgacccggcCCGUCGUCGUCGUc- -3'
miRNA:   3'- -GCGGCGa-CGGC--------GGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 187907 0.75 0.113034
Target:  5'- uGCCGCUcGcCCGCCggGCC-CCGCCGCGa -3'
miRNA:   3'- gCGGCGA-C-GGCGG--CGGcGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 187846 0.67 0.392347
Target:  5'- gCGCCGaggGCU-CUGCCcaGCCGCgCGCGGc -3'
miRNA:   3'- -GCGGCga-CGGcGGCGG--CGGCG-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 187730 0.71 0.224134
Target:  5'- aCGCCGCUauacggcaccGUCGCCaucuccgaacGCCGCCGgCGCcGGu -3'
miRNA:   3'- -GCGGCGA----------CGGCGG----------CGGCGGCgGCG-CC- -5'
10751 3' -68.6 NC_002794.1 + 187579 0.79 0.066893
Target:  5'- cCGCCGUcGgCGCgGCCGCCGUCGCGa -3'
miRNA:   3'- -GCGGCGaCgGCGgCGGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 187540 0.86 0.018254
Target:  5'- cCGCCGCgaccGCCGCCaCCGCCGCCGuCGGg -3'
miRNA:   3'- -GCGGCGa---CGGCGGcGGCGGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 187447 0.79 0.063739
Target:  5'- gCGCCGuCUGCCGCCGCuCGgCGUCGCu- -3'
miRNA:   3'- -GCGGC-GACGGCGGCG-GCgGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 187069 0.68 0.32824
Target:  5'- cCGCCaGgUGCCGCagGCUGCuCGCCacGUGGa -3'
miRNA:   3'- -GCGG-CgACGGCGg-CGGCG-GCGG--CGCC- -5'
10751 3' -68.6 NC_002794.1 + 186940 0.74 0.136258
Target:  5'- cCGCCGCcacgGCCcccggGCCGCUgGCCGCCGCc- -3'
miRNA:   3'- -GCGGCGa---CGG-----CGGCGG-CGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 186492 0.67 0.370094
Target:  5'- gGCCcgGCgGCgCGCCuCC-CCGCCGUGGa -3'
miRNA:   3'- gCGG--CGaCG-GCGGcGGcGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 186395 0.72 0.200668
Target:  5'- aGCCGCaGCCGCgGCCGCaccaGUCgGCGu -3'
miRNA:   3'- gCGGCGaCGGCGgCGGCGg---CGG-CGCc -5'
10751 3' -68.6 NC_002794.1 + 186370 0.88 0.014606
Target:  5'- cCGCCGCcGCCGCCGUCGUCGCCGCa- -3'
miRNA:   3'- -GCGGCGaCGGCGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 186292 0.72 0.205184
Target:  5'- -aCCGCgGCCagGCgGCCgGUCGCCGCGGc -3'
miRNA:   3'- gcGGCGaCGG--CGgCGG-CGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 186096 0.8 0.052503
Target:  5'- gGgCGCUucGUCGCCGUCGCCGCCGcCGGg -3'
miRNA:   3'- gCgGCGA--CGGCGGCGGCGGCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 186064 0.76 0.107834
Target:  5'- gGuCCGUgGCCaCCGCCGCCGCCGCc- -3'
miRNA:   3'- gC-GGCGaCGGcGGCGGCGGCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 185760 0.74 0.139452
Target:  5'- aGCCGCcggcGCgGCCGCCcgucacacgucgGCCGgCGCGGg -3'
miRNA:   3'- gCGGCGa---CGgCGGCGG------------CGGCgGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 185554 0.76 0.093552
Target:  5'- gGCCGCgcGCC-CCGCC-CUGCCGCGGc -3'
miRNA:   3'- gCGGCGa-CGGcGGCGGcGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 185468 0.7 0.249891
Target:  5'- aCGCCGCggGCgGCgGCCGCgGCgaGgGGa -3'
miRNA:   3'- -GCGGCGa-CGgCGgCGGCGgCGg-CgCC- -5'
10751 3' -68.6 NC_002794.1 + 185405 0.66 0.472449
Target:  5'- gGgCGCggGcCCGaCCGCCGUCGacucgaCGCGGc -3'
miRNA:   3'- gCgGCGa-C-GGC-GGCGGCGGCg-----GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.