miRNA display CGI


Results 61 - 80 of 478 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 3' -68.6 NC_002794.1 + 185342 0.75 0.110405
Target:  5'- uCGaCCGCUcGCgCGCCGCCGCgagcgggccgaaCGCCGCGa -3'
miRNA:   3'- -GC-GGCGA-CG-GCGGCGGCG------------GCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 185259 0.68 0.34872
Target:  5'- gCGCCaGCggacGCCGCCgGCCgaguggGCCGCCGgacaGGu -3'
miRNA:   3'- -GCGG-CGa---CGGCGG-CGG------CGGCGGCg---CC- -5'
10751 3' -68.6 NC_002794.1 + 185218 0.74 0.13007
Target:  5'- gCGCCGCggagaGUCG-CGCCGaCCGCCGCGc -3'
miRNA:   3'- -GCGGCGa----CGGCgGCGGC-GGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 185139 0.68 0.341793
Target:  5'- gCGCCGCgucgagaaGaUCGCCGacgcguccuCCGCCGgCGCGGc -3'
miRNA:   3'- -GCGGCGa-------C-GGCGGC---------GGCGGCgGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 185068 0.69 0.30234
Target:  5'- aGCCGCcGCgGcCCGUCGCCGuaGCaGGc -3'
miRNA:   3'- gCGGCGaCGgC-GGCGGCGGCggCG-CC- -5'
10751 3' -68.6 NC_002794.1 + 184951 0.67 0.415453
Target:  5'- aGCUGC-GCCGgcCCGCgcaGCCGCuCGuCGGg -3'
miRNA:   3'- gCGGCGaCGGC--GGCGg--CGGCG-GC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 184582 0.7 0.266489
Target:  5'- nGCgGCgGCgGCCaCgCGCgGCCGCGGg -3'
miRNA:   3'- gCGgCGaCGgCGGcG-GCGgCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 184538 0.77 0.085046
Target:  5'- aCGCCGCccaccGCCGCCucuucggacGCCucacgcGCCGCCGCGGc -3'
miRNA:   3'- -GCGGCGa----CGGCGG---------CGG------CGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 184453 0.8 0.050009
Target:  5'- gCGCCGCUGCCGcCCGCgGgCCGCgcgaacggcgCGCGGg -3'
miRNA:   3'- -GCGGCGACGGC-GGCGgC-GGCG----------GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 184038 0.69 0.296116
Target:  5'- cCGCgCGCaGCgCGCgGUCGCgGgCCGCGGc -3'
miRNA:   3'- -GCG-GCGaCG-GCGgCGGCGgC-GGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 183879 0.74 0.13007
Target:  5'- cCGCCGacaccGCCGCCGucaCCGCCGCCGaCGc -3'
miRNA:   3'- -GCGGCga---CGGCGGC---GGCGGCGGC-GCc -5'
10751 3' -68.6 NC_002794.1 + 183840 0.66 0.423338
Target:  5'- uCGCCGaCgacagGCUcuCCGUCGCgGCCGuCGGg -3'
miRNA:   3'- -GCGGC-Ga----CGGc-GGCGGCGgCGGC-GCC- -5'
10751 3' -68.6 NC_002794.1 + 183678 0.7 0.249891
Target:  5'- gCGCCGacggGUCGagCGcCCGCCGCgCGCGGc -3'
miRNA:   3'- -GCGGCga--CGGCg-GC-GGCGGCG-GCGCC- -5'
10751 3' -68.6 NC_002794.1 + 183610 0.72 0.205184
Target:  5'- gGCCGCgcGCgGCCGgCGCCcCCGCGc -3'
miRNA:   3'- gCGGCGa-CGgCGGCgGCGGcGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 183529 0.68 0.341793
Target:  5'- gGCCG-UGCgCGCC-CCGuCCGCC-CGGg -3'
miRNA:   3'- gCGGCgACG-GCGGcGGC-GGCGGcGCC- -5'
10751 3' -68.6 NC_002794.1 + 183452 0.71 0.234156
Target:  5'- cCGCCaCcGCCGgCGcCCGcCCGCCGCGa -3'
miRNA:   3'- -GCGGcGaCGGCgGC-GGC-GGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 182986 0.72 0.183462
Target:  5'- aGCCGacgGCCGgCGCU-UCGCCGCGGg -3'
miRNA:   3'- gCGGCga-CGGCgGCGGcGGCGGCGCC- -5'
10751 3' -68.6 NC_002794.1 + 181768 0.77 0.087101
Target:  5'- aCGCCGaUGgCGCCG-CGCCGCCGCGu -3'
miRNA:   3'- -GCGGCgACgGCGGCgGCGGCGGCGCc -5'
10751 3' -68.6 NC_002794.1 + 181594 0.72 0.179368
Target:  5'- gGCCGCgaccggGUCGCC-CCGuuGCCGCa- -3'
miRNA:   3'- gCGGCGa-----CGGCGGcGGCggCGGCGcc -5'
10751 3' -68.6 NC_002794.1 + 181521 0.69 0.315089
Target:  5'- aCGUCGU--CCGuUCGcCCGCCGCCgGCGGg -3'
miRNA:   3'- -GCGGCGacGGC-GGC-GGCGGCGG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.