miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10751 5' -56.9 NC_002794.1 + 122341 0.66 0.9034
Target:  5'- -cCCUGGCcgUCCGGAgcaccgaggucugcUaCGGCGGCAGc- -3'
miRNA:   3'- caGGACCG--AGGCCU--------------A-GCUGCUGUCaa -5'
10751 5' -56.9 NC_002794.1 + 122507 0.66 0.891913
Target:  5'- -gCCgcaggagGGCUucuccggCCGGAUCGACGACcAGg- -3'
miRNA:   3'- caGGa------CCGA-------GGCCUAGCUGCUG-UCaa -5'
10751 5' -56.9 NC_002794.1 + 116916 0.67 0.879013
Target:  5'- gGUCCggcgucGGCUCCGGcGUCGuCGGCGu-- -3'
miRNA:   3'- -CAGGa-----CCGAGGCC-UAGCuGCUGUcaa -5'
10751 5' -56.9 NC_002794.1 + 78308 0.67 0.879013
Target:  5'- -aCCUGGCUcucgcccucucCCGGcgCGACgGGCGGa- -3'
miRNA:   3'- caGGACCGA-----------GGCCuaGCUG-CUGUCaa -5'
10751 5' -56.9 NC_002794.1 + 113710 0.67 0.871913
Target:  5'- gGUUCUGGCUCagGGAcggcgUCGGCGACu--- -3'
miRNA:   3'- -CAGGACCGAGg-CCU-----AGCUGCUGucaa -5'
10751 5' -56.9 NC_002794.1 + 112103 0.68 0.833405
Target:  5'- cGUCCaGGCgcggCCGGGaCGACGGCGc-- -3'
miRNA:   3'- -CAGGaCCGa---GGCCUaGCUGCUGUcaa -5'
10751 5' -56.9 NC_002794.1 + 10824 0.68 0.833405
Target:  5'- cUCCUGGCUCCGa---GACGGCGc-- -3'
miRNA:   3'- cAGGACCGAGGCcuagCUGCUGUcaa -5'
10751 5' -56.9 NC_002794.1 + 140096 0.68 0.808124
Target:  5'- cGUCCaUGGUcggCgGcGAUCGACGGCGGUc -3'
miRNA:   3'- -CAGG-ACCGa--GgC-CUAGCUGCUGUCAa -5'
10751 5' -56.9 NC_002794.1 + 20625 0.69 0.790485
Target:  5'- -gCCcGGCUCCGGcugccUCGACGGCuGGUg -3'
miRNA:   3'- caGGaCCGAGGCCu----AGCUGCUG-UCAa -5'
10751 5' -56.9 NC_002794.1 + 106336 0.69 0.781454
Target:  5'- gGUCgacGGUucgCCGGGUCGACGGCGGg- -3'
miRNA:   3'- -CAGga-CCGa--GGCCUAGCUGCUGUCaa -5'
10751 5' -56.9 NC_002794.1 + 13658 0.69 0.766739
Target:  5'- uGUCCUGGCacgugccgccgccacUCCGG-UCGACGGaAGUc -3'
miRNA:   3'- -CAGGACCG---------------AGGCCuAGCUGCUgUCAa -5'
10751 5' -56.9 NC_002794.1 + 128841 0.69 0.753618
Target:  5'- aUCCUGaGCgCCGGcGUCGACGACGc-- -3'
miRNA:   3'- cAGGAC-CGaGGCC-UAGCUGCUGUcaa -5'
10751 5' -56.9 NC_002794.1 + 88970 0.69 0.753618
Target:  5'- -gCgUGGCcgCCGGAUCGucGCGGCAGa- -3'
miRNA:   3'- caGgACCGa-GGCCUAGC--UGCUGUCaa -5'
10751 5' -56.9 NC_002794.1 + 129181 0.71 0.675472
Target:  5'- cGUUCgaucGGcCUCCGGGUCGACGACcGa- -3'
miRNA:   3'- -CAGGa---CC-GAGGCCUAGCUGCUGuCaa -5'
10751 5' -56.9 NC_002794.1 + 13437 0.71 0.675472
Target:  5'- cUCCUGGCUCCcGA-CGACGACu--- -3'
miRNA:   3'- cAGGACCGAGGcCUaGCUGCUGucaa -5'
10751 5' -56.9 NC_002794.1 + 136393 0.72 0.625229
Target:  5'- -aCC-GGCUCCGGGUCGcgcgugcgcugaACGGCGGUc -3'
miRNA:   3'- caGGaCCGAGGCCUAGC------------UGCUGUCAa -5'
10751 5' -56.9 NC_002794.1 + 131006 0.75 0.460052
Target:  5'- cGUCCUGGCUCaCGGGUCGguggucguGCGGCGc-- -3'
miRNA:   3'- -CAGGACCGAG-GCCUAGC--------UGCUGUcaa -5'
10751 5' -56.9 NC_002794.1 + 121277 1.06 0.004708
Target:  5'- cGUCCUGGCUCCGGAUCGACGACAGUUa -3'
miRNA:   3'- -CAGGACCGAGGCCUAGCUGCUGUCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.