Results 1 - 18 of 18 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 122507 | 0.66 | 0.891913 |
Target: 5'- -gCCgcaggagGGCUucuccggCCGGAUCGACGACcAGg- -3' miRNA: 3'- caGGa------CCGA-------GGCCUAGCUGCUG-UCaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 122341 | 0.66 | 0.9034 |
Target: 5'- -cCCUGGCcgUCCGGAgcaccgaggucugcUaCGGCGGCAGc- -3' miRNA: 3'- caGGACCG--AGGCCU--------------A-GCUGCUGUCaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 116916 | 0.67 | 0.879013 |
Target: 5'- gGUCCggcgucGGCUCCGGcGUCGuCGGCGu-- -3' miRNA: 3'- -CAGGa-----CCGAGGCC-UAGCuGCUGUcaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 78308 | 0.67 | 0.879013 |
Target: 5'- -aCCUGGCUcucgcccucucCCGGcgCGACgGGCGGa- -3' miRNA: 3'- caGGACCGA-----------GGCCuaGCUG-CUGUCaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 113710 | 0.67 | 0.871913 |
Target: 5'- gGUUCUGGCUCagGGAcggcgUCGGCGACu--- -3' miRNA: 3'- -CAGGACCGAGg-CCU-----AGCUGCUGucaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 140096 | 0.68 | 0.808124 |
Target: 5'- cGUCCaUGGUcggCgGcGAUCGACGGCGGUc -3' miRNA: 3'- -CAGG-ACCGa--GgC-CUAGCUGCUGUCAa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 112103 | 0.68 | 0.833405 |
Target: 5'- cGUCCaGGCgcggCCGGGaCGACGGCGc-- -3' miRNA: 3'- -CAGGaCCGa---GGCCUaGCUGCUGUcaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 10824 | 0.68 | 0.833405 |
Target: 5'- cUCCUGGCUCCGa---GACGGCGc-- -3' miRNA: 3'- cAGGACCGAGGCcuagCUGCUGUcaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 88970 | 0.69 | 0.753618 |
Target: 5'- -gCgUGGCcgCCGGAUCGucGCGGCAGa- -3' miRNA: 3'- caGgACCGa-GGCCUAGC--UGCUGUCaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 128841 | 0.69 | 0.753618 |
Target: 5'- aUCCUGaGCgCCGGcGUCGACGACGc-- -3' miRNA: 3'- cAGGAC-CGaGGCC-UAGCUGCUGUcaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 106336 | 0.69 | 0.781454 |
Target: 5'- gGUCgacGGUucgCCGGGUCGACGGCGGg- -3' miRNA: 3'- -CAGga-CCGa--GGCCUAGCUGCUGUCaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 13658 | 0.69 | 0.766739 |
Target: 5'- uGUCCUGGCacgugccgccgccacUCCGG-UCGACGGaAGUc -3' miRNA: 3'- -CAGGACCG---------------AGGCCuAGCUGCUgUCAa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 20625 | 0.69 | 0.790485 |
Target: 5'- -gCCcGGCUCCGGcugccUCGACGGCuGGUg -3' miRNA: 3'- caGGaCCGAGGCCu----AGCUGCUG-UCAa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 129181 | 0.71 | 0.675472 |
Target: 5'- cGUUCgaucGGcCUCCGGGUCGACGACcGa- -3' miRNA: 3'- -CAGGa---CC-GAGGCCUAGCUGCUGuCaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 13437 | 0.71 | 0.675472 |
Target: 5'- cUCCUGGCUCCcGA-CGACGACu--- -3' miRNA: 3'- cAGGACCGAGGcCUaGCUGCUGucaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 136393 | 0.72 | 0.625229 |
Target: 5'- -aCC-GGCUCCGGGUCGcgcgugcgcugaACGGCGGUc -3' miRNA: 3'- caGGaCCGAGGCCUAGC------------UGCUGUCAa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 131006 | 0.75 | 0.460052 |
Target: 5'- cGUCCUGGCUCaCGGGUCGguggucguGCGGCGc-- -3' miRNA: 3'- -CAGGACCGAG-GCCUAGC--------UGCUGUcaa -5' |
|||||||
10751 | 5' | -56.9 | NC_002794.1 | + | 121277 | 1.06 | 0.004708 |
Target: 5'- cGUCCUGGCUCCGGAUCGACGACAGUUa -3' miRNA: 3'- -CAGGACCGAGGCCUAGCUGCUGUCAA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home