miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10752 3' -59.8 NC_002794.1 + 113971 0.66 0.783814
Target:  5'- cUCCUgcUCGCGCCGCUccucGAGCagccGUUCGAg -3'
miRNA:   3'- uAGGA--GGCGCGGCGG----UUCGc---CAAGUU- -5'
10752 3' -59.8 NC_002794.1 + 14902 0.66 0.783814
Target:  5'- -aCCUUCGCGCuCGaUCGAGCGGgcUCGc -3'
miRNA:   3'- uaGGAGGCGCG-GC-GGUUCGCCa-AGUu -5'
10752 3' -59.8 NC_002794.1 + 37718 0.66 0.778379
Target:  5'- cUCCUCgCgacccgcgagcggcgGCGCCGCCGgcGGCGGcgCGg -3'
miRNA:   3'- uAGGAG-G---------------CGCGGCGGU--UCGCCaaGUu -5'
10752 3' -59.8 NC_002794.1 + 141646 0.66 0.756209
Target:  5'- -gCCggcguggCCGCgGCCGCCG-GCGGgUCGAg -3'
miRNA:   3'- uaGGa------GGCG-CGGCGGUuCGCCaAGUU- -5'
10752 3' -59.8 NC_002794.1 + 76534 0.66 0.756209
Target:  5'- -aCCggCCGCGgCGCCGAcGCGG-UCGc -3'
miRNA:   3'- uaGGa-GGCGCgGCGGUU-CGCCaAGUu -5'
10752 3' -59.8 NC_002794.1 + 188325 0.66 0.756209
Target:  5'- cGUCCU-CGuCGCCGCCGccGGCGGcgccgUCGc -3'
miRNA:   3'- -UAGGAgGC-GCGGCGGU--UCGCCa----AGUu -5'
10752 3' -59.8 NC_002794.1 + 193303 0.66 0.756209
Target:  5'- cGUCCgcUCCGCGCCGCaCGcAGCgcccgaucGGUUCc- -3'
miRNA:   3'- -UAGG--AGGCGCGGCG-GU-UCG--------CCAAGuu -5'
10752 3' -59.8 NC_002794.1 + 65755 0.66 0.746786
Target:  5'- -gCC-CCGCGCCGCCGccgcccguGGUGGggcCGAg -3'
miRNA:   3'- uaGGaGGCGCGGCGGU--------UCGCCaa-GUU- -5'
10752 3' -59.8 NC_002794.1 + 80942 0.66 0.746786
Target:  5'- -aCUUCUGCGCCugccgcGCCAAGCucgGGUUCc- -3'
miRNA:   3'- uaGGAGGCGCGG------CGGUUCG---CCAAGuu -5'
10752 3' -59.8 NC_002794.1 + 192644 0.67 0.708217
Target:  5'- cUCCagCCGCGCCGCCGcGCGc-UCGc -3'
miRNA:   3'- uAGGa-GGCGCGGCGGUuCGCcaAGUu -5'
10752 3' -59.8 NC_002794.1 + 794 0.67 0.698399
Target:  5'- -gCCaaCCGUGCCGuCCGGGCGG-UCGGg -3'
miRNA:   3'- uaGGa-GGCGCGGC-GGUUCGCCaAGUU- -5'
10752 3' -59.8 NC_002794.1 + 38698 0.67 0.698399
Target:  5'- -aCCgCCGCGCCGUCGAGCGc----- -3'
miRNA:   3'- uaGGaGGCGCGGCGGUUCGCcaaguu -5'
10752 3' -59.8 NC_002794.1 + 113606 0.67 0.688527
Target:  5'- uUUCUCCaGCGCCGC--GGCcaGGUUCAGg -3'
miRNA:   3'- uAGGAGG-CGCGGCGguUCG--CCAAGUU- -5'
10752 3' -59.8 NC_002794.1 + 156106 0.68 0.668658
Target:  5'- -gCUUUCGCGUCGCCGAGUGucgUCGAc -3'
miRNA:   3'- uaGGAGGCGCGGCGGUUCGCca-AGUU- -5'
10752 3' -59.8 NC_002794.1 + 71765 0.68 0.668658
Target:  5'- uUCCgaccggUCCGCGCCGUCGcGCGGcgagUCGc -3'
miRNA:   3'- uAGG------AGGCGCGGCGGUuCGCCa---AGUu -5'
10752 3' -59.8 NC_002794.1 + 137658 0.68 0.658676
Target:  5'- -gCCUCCgGCGCCGCUGGuGCGGacgCAc -3'
miRNA:   3'- uaGGAGG-CGCGGCGGUU-CGCCaa-GUu -5'
10752 3' -59.8 NC_002794.1 + 186549 0.68 0.648675
Target:  5'- uUCC-CCGCGCCcguuGCgAucguAGCGGUUCAc -3'
miRNA:   3'- uAGGaGGCGCGG----CGgU----UCGCCAAGUu -5'
10752 3' -59.8 NC_002794.1 + 127593 0.68 0.628641
Target:  5'- uUCaCUCUGCgcgGCCGCUGAGCGGcgCGGa -3'
miRNA:   3'- uAG-GAGGCG---CGGCGGUUCGCCaaGUU- -5'
10752 3' -59.8 NC_002794.1 + 183189 0.68 0.627639
Target:  5'- -aCCgagaCGCGCCGCCAcgccggcGGCGcGUUCGu -3'
miRNA:   3'- uaGGag--GCGCGGCGGU-------UCGC-CAAGUu -5'
10752 3' -59.8 NC_002794.1 + 183658 0.69 0.608617
Target:  5'- cUUCUCCGCGCCGggcCCGAGCGccgacgggUCGAg -3'
miRNA:   3'- uAGGAGGCGCGGC---GGUUCGCca------AGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.