Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10752 | 3' | -59.8 | NC_002794.1 | + | 113971 | 0.66 | 0.783814 |
Target: 5'- cUCCUgcUCGCGCCGCUccucGAGCagccGUUCGAg -3' miRNA: 3'- uAGGA--GGCGCGGCGG----UUCGc---CAAGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 14902 | 0.66 | 0.783814 |
Target: 5'- -aCCUUCGCGCuCGaUCGAGCGGgcUCGc -3' miRNA: 3'- uaGGAGGCGCG-GC-GGUUCGCCa-AGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 37718 | 0.66 | 0.778379 |
Target: 5'- cUCCUCgCgacccgcgagcggcgGCGCCGCCGgcGGCGGcgCGg -3' miRNA: 3'- uAGGAG-G---------------CGCGGCGGU--UCGCCaaGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 141646 | 0.66 | 0.756209 |
Target: 5'- -gCCggcguggCCGCgGCCGCCG-GCGGgUCGAg -3' miRNA: 3'- uaGGa------GGCG-CGGCGGUuCGCCaAGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 76534 | 0.66 | 0.756209 |
Target: 5'- -aCCggCCGCGgCGCCGAcGCGG-UCGc -3' miRNA: 3'- uaGGa-GGCGCgGCGGUU-CGCCaAGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 188325 | 0.66 | 0.756209 |
Target: 5'- cGUCCU-CGuCGCCGCCGccGGCGGcgccgUCGc -3' miRNA: 3'- -UAGGAgGC-GCGGCGGU--UCGCCa----AGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 193303 | 0.66 | 0.756209 |
Target: 5'- cGUCCgcUCCGCGCCGCaCGcAGCgcccgaucGGUUCc- -3' miRNA: 3'- -UAGG--AGGCGCGGCG-GU-UCG--------CCAAGuu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 65755 | 0.66 | 0.746786 |
Target: 5'- -gCC-CCGCGCCGCCGccgcccguGGUGGggcCGAg -3' miRNA: 3'- uaGGaGGCGCGGCGGU--------UCGCCaa-GUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 80942 | 0.66 | 0.746786 |
Target: 5'- -aCUUCUGCGCCugccgcGCCAAGCucgGGUUCc- -3' miRNA: 3'- uaGGAGGCGCGG------CGGUUCG---CCAAGuu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 192644 | 0.67 | 0.708217 |
Target: 5'- cUCCagCCGCGCCGCCGcGCGc-UCGc -3' miRNA: 3'- uAGGa-GGCGCGGCGGUuCGCcaAGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 794 | 0.67 | 0.698399 |
Target: 5'- -gCCaaCCGUGCCGuCCGGGCGG-UCGGg -3' miRNA: 3'- uaGGa-GGCGCGGC-GGUUCGCCaAGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 38698 | 0.67 | 0.698399 |
Target: 5'- -aCCgCCGCGCCGUCGAGCGc----- -3' miRNA: 3'- uaGGaGGCGCGGCGGUUCGCcaaguu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 113606 | 0.67 | 0.688527 |
Target: 5'- uUUCUCCaGCGCCGC--GGCcaGGUUCAGg -3' miRNA: 3'- uAGGAGG-CGCGGCGguUCG--CCAAGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 156106 | 0.68 | 0.668658 |
Target: 5'- -gCUUUCGCGUCGCCGAGUGucgUCGAc -3' miRNA: 3'- uaGGAGGCGCGGCGGUUCGCca-AGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 71765 | 0.68 | 0.668658 |
Target: 5'- uUCCgaccggUCCGCGCCGUCGcGCGGcgagUCGc -3' miRNA: 3'- uAGG------AGGCGCGGCGGUuCGCCa---AGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 137658 | 0.68 | 0.658676 |
Target: 5'- -gCCUCCgGCGCCGCUGGuGCGGacgCAc -3' miRNA: 3'- uaGGAGG-CGCGGCGGUU-CGCCaa-GUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 186549 | 0.68 | 0.648675 |
Target: 5'- uUCC-CCGCGCCcguuGCgAucguAGCGGUUCAc -3' miRNA: 3'- uAGGaGGCGCGG----CGgU----UCGCCAAGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 127593 | 0.68 | 0.628641 |
Target: 5'- uUCaCUCUGCgcgGCCGCUGAGCGGcgCGGa -3' miRNA: 3'- uAG-GAGGCG---CGGCGGUUCGCCaaGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 183189 | 0.68 | 0.627639 |
Target: 5'- -aCCgagaCGCGCCGCCAcgccggcGGCGcGUUCGu -3' miRNA: 3'- uaGGag--GCGCGGCGGU-------UCGC-CAAGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 183658 | 0.69 | 0.608617 |
Target: 5'- cUUCUCCGCGCCGggcCCGAGCGccgacgggUCGAg -3' miRNA: 3'- uAGGAGGCGCGGC---GGUUCGCca------AGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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