miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10752 3' -59.8 NC_002794.1 + 39642 0.69 0.598627
Target:  5'- cUCCUCUuCGCCGCCuGGGUGGUcuUCGc -3'
miRNA:   3'- uAGGAGGcGCGGCGG-UUCGCCA--AGUu -5'
10752 3' -59.8 NC_002794.1 + 145914 0.69 0.578725
Target:  5'- aGUCgaCCGCGCCgagcggagggGCCGgcgagAGCGGUUCGGg -3'
miRNA:   3'- -UAGgaGGCGCGG----------CGGU-----UCGCCAAGUU- -5'
10752 3' -59.8 NC_002794.1 + 192360 0.69 0.558968
Target:  5'- -gCCUCCGcCGCCGCCGAccgagcGCGGg---- -3'
miRNA:   3'- uaGGAGGC-GCGGCGGUU------CGCCaaguu -5'
10752 3' -59.8 NC_002794.1 + 135739 0.69 0.558968
Target:  5'- -aCCUgCCGCGCCGCgcccucgaggauCAGGCGGUgcuggcugUCGAg -3'
miRNA:   3'- uaGGA-GGCGCGGCG------------GUUCGCCA--------AGUU- -5'
10752 3' -59.8 NC_002794.1 + 19431 0.69 0.558968
Target:  5'- cUCCUCCGCGaCCaggccCCGAGCGGgcaCGAg -3'
miRNA:   3'- uAGGAGGCGC-GGc----GGUUCGCCaa-GUU- -5'
10752 3' -59.8 NC_002794.1 + 17431 0.7 0.54916
Target:  5'- -gUCUCCGCGCCGCC-GGCGc-UCGGg -3'
miRNA:   3'- uaGGAGGCGCGGCGGuUCGCcaAGUU- -5'
10752 3' -59.8 NC_002794.1 + 71331 0.7 0.520081
Target:  5'- -aCCUCgGCGgcgaugucguCCGCCAGGCGGcgCAGc -3'
miRNA:   3'- uaGGAGgCGC----------GGCGGUUCGCCaaGUU- -5'
10752 3' -59.8 NC_002794.1 + 195021 0.7 0.519122
Target:  5'- cUCCUCgaagucgCGCGCCGCCAGGUGcaUCGu -3'
miRNA:   3'- uAGGAG-------GCGCGGCGGUUCGCcaAGUu -5'
10752 3' -59.8 NC_002794.1 + 107306 0.7 0.51052
Target:  5'- cUCCUCgcggggGCGCCGuCCGcGCGGUUCGg -3'
miRNA:   3'- uAGGAGg-----CGCGGC-GGUuCGCCAAGUu -5'
10752 3' -59.8 NC_002794.1 + 143733 0.71 0.491626
Target:  5'- cGUCCUCgcccgccggaCGCGCCGCCGGGgGGcUCc- -3'
miRNA:   3'- -UAGGAG----------GCGCGGCGGUUCgCCaAGuu -5'
10752 3' -59.8 NC_002794.1 + 36555 0.71 0.476746
Target:  5'- cUCCUCCguccgcugcagacacGCGCCGCCGagcaGGCGGUcCGc -3'
miRNA:   3'- uAGGAGG---------------CGCGGCGGU----UCGCCAaGUu -5'
10752 3' -59.8 NC_002794.1 + 185348 0.71 0.473061
Target:  5'- --gCUCgCGCGCCGCCGcgAGCGGgcCGAa -3'
miRNA:   3'- uagGAG-GCGCGGCGGU--UCGCCaaGUU- -5'
10752 3' -59.8 NC_002794.1 + 26070 0.71 0.473061
Target:  5'- -cCCcCCGCGCaCGCCAcGCGGggCAGc -3'
miRNA:   3'- uaGGaGGCGCG-GCGGUuCGCCaaGUU- -5'
10752 3' -59.8 NC_002794.1 + 141579 0.71 0.44234
Target:  5'- cUCCgugaucaugacgcCCGCGUCGCCGGGCGGcUCGg -3'
miRNA:   3'- uAGGa------------GGCGCGGCGGUUCGCCaAGUu -5'
10752 3' -59.8 NC_002794.1 + 184565 0.72 0.419625
Target:  5'- -gCCUCaCGCGCCGCCGcGGCGGcggCGg -3'
miRNA:   3'- uaGGAG-GCGCGGCGGU-UCGCCaa-GUu -5'
10752 3' -59.8 NC_002794.1 + 107207 0.72 0.411078
Target:  5'- -gCCUCgcccgGCGCCGCCGGGCGGcgCGc -3'
miRNA:   3'- uaGGAGg----CGCGGCGGUUCGCCaaGUu -5'
10752 3' -59.8 NC_002794.1 + 55016 0.72 0.41023
Target:  5'- cGUCCgccgCCGCGCCGCCGcgagcacGGC-GUUCAc -3'
miRNA:   3'- -UAGGa---GGCGCGGCGGU-------UCGcCAAGUu -5'
10752 3' -59.8 NC_002794.1 + 152129 0.73 0.362141
Target:  5'- --gCUCCGCcCUGCCGAGCcGGUUCAAc -3'
miRNA:   3'- uagGAGGCGcGGCGGUUCG-CCAAGUU- -5'
10752 3' -59.8 NC_002794.1 + 13879 0.76 0.235085
Target:  5'- gGUUCUCCgaGCGCCGCCcuGUGGUUCGu -3'
miRNA:   3'- -UAGGAGG--CGCGGCGGuuCGCCAAGUu -5'
10752 3' -59.8 NC_002794.1 + 120175 1.04 0.00291
Target:  5'- gAUCCUCCGCGCCGCCAAGCGGUUCAAg -3'
miRNA:   3'- -UAGGAGGCGCGGCGGUUCGCCAAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.