Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10752 | 3' | -59.8 | NC_002794.1 | + | 120175 | 1.04 | 0.00291 |
Target: 5'- gAUCCUCCGCGCCGCCAAGCGGUUCAAg -3' miRNA: 3'- -UAGGAGGCGCGGCGGUUCGCCAAGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 127593 | 0.68 | 0.628641 |
Target: 5'- uUCaCUCUGCgcgGCCGCUGAGCGGcgCGGa -3' miRNA: 3'- uAG-GAGGCG---CGGCGGUUCGCCaaGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 135739 | 0.69 | 0.558968 |
Target: 5'- -aCCUgCCGCGCCGCgcccucgaggauCAGGCGGUgcuggcugUCGAg -3' miRNA: 3'- uaGGA-GGCGCGGCG------------GUUCGCCA--------AGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 137658 | 0.68 | 0.658676 |
Target: 5'- -gCCUCCgGCGCCGCUGGuGCGGacgCAc -3' miRNA: 3'- uaGGAGG-CGCGGCGGUU-CGCCaa-GUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 141579 | 0.71 | 0.44234 |
Target: 5'- cUCCgugaucaugacgcCCGCGUCGCCGGGCGGcUCGg -3' miRNA: 3'- uAGGa------------GGCGCGGCGGUUCGCCaAGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 141646 | 0.66 | 0.756209 |
Target: 5'- -gCCggcguggCCGCgGCCGCCG-GCGGgUCGAg -3' miRNA: 3'- uaGGa------GGCG-CGGCGGUuCGCCaAGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 143733 | 0.71 | 0.491626 |
Target: 5'- cGUCCUCgcccgccggaCGCGCCGCCGGGgGGcUCc- -3' miRNA: 3'- -UAGGAG----------GCGCGGCGGUUCgCCaAGuu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 145914 | 0.69 | 0.578725 |
Target: 5'- aGUCgaCCGCGCCgagcggagggGCCGgcgagAGCGGUUCGGg -3' miRNA: 3'- -UAGgaGGCGCGG----------CGGU-----UCGCCAAGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 152129 | 0.73 | 0.362141 |
Target: 5'- --gCUCCGCcCUGCCGAGCcGGUUCAAc -3' miRNA: 3'- uagGAGGCGcGGCGGUUCG-CCAAGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 156106 | 0.68 | 0.668658 |
Target: 5'- -gCUUUCGCGUCGCCGAGUGucgUCGAc -3' miRNA: 3'- uaGGAGGCGCGGCGGUUCGCca-AGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 183189 | 0.68 | 0.627639 |
Target: 5'- -aCCgagaCGCGCCGCCAcgccggcGGCGcGUUCGu -3' miRNA: 3'- uaGGag--GCGCGGCGGU-------UCGC-CAAGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 183658 | 0.69 | 0.608617 |
Target: 5'- cUUCUCCGCGCCGggcCCGAGCGccgacgggUCGAg -3' miRNA: 3'- uAGGAGGCGCGGC---GGUUCGCca------AGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 184565 | 0.72 | 0.419625 |
Target: 5'- -gCCUCaCGCGCCGCCGcGGCGGcggCGg -3' miRNA: 3'- uaGGAG-GCGCGGCGGU-UCGCCaa-GUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 185348 | 0.71 | 0.473061 |
Target: 5'- --gCUCgCGCGCCGCCGcgAGCGGgcCGAa -3' miRNA: 3'- uagGAG-GCGCGGCGGU--UCGCCaaGUU- -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 186549 | 0.68 | 0.648675 |
Target: 5'- uUCC-CCGCGCCcguuGCgAucguAGCGGUUCAc -3' miRNA: 3'- uAGGaGGCGCGG----CGgU----UCGCCAAGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 188325 | 0.66 | 0.756209 |
Target: 5'- cGUCCU-CGuCGCCGCCGccGGCGGcgccgUCGc -3' miRNA: 3'- -UAGGAgGC-GCGGCGGU--UCGCCa----AGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 192360 | 0.69 | 0.558968 |
Target: 5'- -gCCUCCGcCGCCGCCGAccgagcGCGGg---- -3' miRNA: 3'- uaGGAGGC-GCGGCGGUU------CGCCaaguu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 192644 | 0.67 | 0.708217 |
Target: 5'- cUCCagCCGCGCCGCCGcGCGc-UCGc -3' miRNA: 3'- uAGGa-GGCGCGGCGGUuCGCcaAGUu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 193303 | 0.66 | 0.756209 |
Target: 5'- cGUCCgcUCCGCGCCGCaCGcAGCgcccgaucGGUUCc- -3' miRNA: 3'- -UAGG--AGGCGCGGCG-GU-UCG--------CCAAGuu -5' |
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10752 | 3' | -59.8 | NC_002794.1 | + | 195021 | 0.7 | 0.519122 |
Target: 5'- cUCCUCgaagucgCGCGCCGCCAGGUGcaUCGu -3' miRNA: 3'- uAGGAG-------GCGCGGCGGUUCGCcaAGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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