miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10752 3' -59.8 NC_002794.1 + 113971 0.66 0.783814
Target:  5'- cUCCUgcUCGCGCCGCUccucGAGCagccGUUCGAg -3'
miRNA:   3'- uAGGA--GGCGCGGCGG----UUCGc---CAAGUU- -5'
10752 3' -59.8 NC_002794.1 + 113606 0.67 0.688527
Target:  5'- uUUCUCCaGCGCCGC--GGCcaGGUUCAGg -3'
miRNA:   3'- uAGGAGG-CGCGGCGguUCG--CCAAGUU- -5'
10752 3' -59.8 NC_002794.1 + 107306 0.7 0.51052
Target:  5'- cUCCUCgcggggGCGCCGuCCGcGCGGUUCGg -3'
miRNA:   3'- uAGGAGg-----CGCGGC-GGUuCGCCAAGUu -5'
10752 3' -59.8 NC_002794.1 + 107207 0.72 0.411078
Target:  5'- -gCCUCgcccgGCGCCGCCGGGCGGcgCGc -3'
miRNA:   3'- uaGGAGg----CGCGGCGGUUCGCCaaGUu -5'
10752 3' -59.8 NC_002794.1 + 80942 0.66 0.746786
Target:  5'- -aCUUCUGCGCCugccgcGCCAAGCucgGGUUCc- -3'
miRNA:   3'- uaGGAGGCGCGG------CGGUUCG---CCAAGuu -5'
10752 3' -59.8 NC_002794.1 + 76534 0.66 0.756209
Target:  5'- -aCCggCCGCGgCGCCGAcGCGG-UCGc -3'
miRNA:   3'- uaGGa-GGCGCgGCGGUU-CGCCaAGUu -5'
10752 3' -59.8 NC_002794.1 + 71765 0.68 0.668658
Target:  5'- uUCCgaccggUCCGCGCCGUCGcGCGGcgagUCGc -3'
miRNA:   3'- uAGG------AGGCGCGGCGGUuCGCCa---AGUu -5'
10752 3' -59.8 NC_002794.1 + 71331 0.7 0.520081
Target:  5'- -aCCUCgGCGgcgaugucguCCGCCAGGCGGcgCAGc -3'
miRNA:   3'- uaGGAGgCGC----------GGCGGUUCGCCaaGUU- -5'
10752 3' -59.8 NC_002794.1 + 65755 0.66 0.746786
Target:  5'- -gCC-CCGCGCCGCCGccgcccguGGUGGggcCGAg -3'
miRNA:   3'- uaGGaGGCGCGGCGGU--------UCGCCaa-GUU- -5'
10752 3' -59.8 NC_002794.1 + 55016 0.72 0.41023
Target:  5'- cGUCCgccgCCGCGCCGCCGcgagcacGGC-GUUCAc -3'
miRNA:   3'- -UAGGa---GGCGCGGCGGU-------UCGcCAAGUu -5'
10752 3' -59.8 NC_002794.1 + 39642 0.69 0.598627
Target:  5'- cUCCUCUuCGCCGCCuGGGUGGUcuUCGc -3'
miRNA:   3'- uAGGAGGcGCGGCGG-UUCGCCA--AGUu -5'
10752 3' -59.8 NC_002794.1 + 38698 0.67 0.698399
Target:  5'- -aCCgCCGCGCCGUCGAGCGc----- -3'
miRNA:   3'- uaGGaGGCGCGGCGGUUCGCcaaguu -5'
10752 3' -59.8 NC_002794.1 + 37718 0.66 0.778379
Target:  5'- cUCCUCgCgacccgcgagcggcgGCGCCGCCGgcGGCGGcgCGg -3'
miRNA:   3'- uAGGAG-G---------------CGCGGCGGU--UCGCCaaGUu -5'
10752 3' -59.8 NC_002794.1 + 36555 0.71 0.476746
Target:  5'- cUCCUCCguccgcugcagacacGCGCCGCCGagcaGGCGGUcCGc -3'
miRNA:   3'- uAGGAGG---------------CGCGGCGGU----UCGCCAaGUu -5'
10752 3' -59.8 NC_002794.1 + 26070 0.71 0.473061
Target:  5'- -cCCcCCGCGCaCGCCAcGCGGggCAGc -3'
miRNA:   3'- uaGGaGGCGCG-GCGGUuCGCCaaGUU- -5'
10752 3' -59.8 NC_002794.1 + 19431 0.69 0.558968
Target:  5'- cUCCUCCGCGaCCaggccCCGAGCGGgcaCGAg -3'
miRNA:   3'- uAGGAGGCGC-GGc----GGUUCGCCaa-GUU- -5'
10752 3' -59.8 NC_002794.1 + 17431 0.7 0.54916
Target:  5'- -gUCUCCGCGCCGCC-GGCGc-UCGGg -3'
miRNA:   3'- uaGGAGGCGCGGCGGuUCGCcaAGUU- -5'
10752 3' -59.8 NC_002794.1 + 14902 0.66 0.783814
Target:  5'- -aCCUUCGCGCuCGaUCGAGCGGgcUCGc -3'
miRNA:   3'- uaGGAGGCGCG-GC-GGUUCGCCa-AGUu -5'
10752 3' -59.8 NC_002794.1 + 13879 0.76 0.235085
Target:  5'- gGUUCUCCgaGCGCCGCCcuGUGGUUCGu -3'
miRNA:   3'- -UAGGAGG--CGCGGCGGuuCGCCAAGUu -5'
10752 3' -59.8 NC_002794.1 + 794 0.67 0.698399
Target:  5'- -gCCaaCCGUGCCGuCCGGGCGG-UCGGg -3'
miRNA:   3'- uaGGa-GGCGCGGC-GGUUCGCCaAGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.