miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10752 5' -61.3 NC_002794.1 + 152122 0.66 0.79978
Target:  5'- --cUGCGCCGCuCCGcccUGCCGaGCCGg -3'
miRNA:   3'- ccaGCGCGGCG-GGCac-AUGGUgCGGC- -5'
10752 5' -61.3 NC_002794.1 + 38673 0.66 0.79978
Target:  5'- --cCGCGCgCGaCCCGcggacgggGUcaccGCCGCGCCGu -3'
miRNA:   3'- ccaGCGCG-GC-GGGCa-------CA----UGGUGCGGC- -5'
10752 5' -61.3 NC_002794.1 + 37736 0.66 0.79978
Target:  5'- cGG-CgGCGCCGCCgGcGgcggcgcgGCgGCGCCGg -3'
miRNA:   3'- -CCaG-CGCGGCGGgCaCa-------UGgUGCGGC- -5'
10752 5' -61.3 NC_002794.1 + 34964 0.66 0.79978
Target:  5'- --cCGCGCCuCCCGUc--CCugGCCa -3'
miRNA:   3'- ccaGCGCGGcGGGCAcauGGugCGGc -5'
10752 5' -61.3 NC_002794.1 + 69279 0.66 0.79978
Target:  5'- cGGUC-CGCCGCCgaaCGcc-GCCACuGCCGc -3'
miRNA:   3'- -CCAGcGCGGCGG---GCacaUGGUG-CGGC- -5'
10752 5' -61.3 NC_002794.1 + 56090 0.66 0.79978
Target:  5'- aGGcCGCGCaGCaCGUgcGUGCUGCGCUGg -3'
miRNA:   3'- -CCaGCGCGgCGgGCA--CAUGGUGCGGC- -5'
10752 5' -61.3 NC_002794.1 + 40571 0.66 0.79978
Target:  5'- -uUCGCGCCGUCC-UG-GCCGCggGCCc -3'
miRNA:   3'- ccAGCGCGGCGGGcACaUGGUG--CGGc -5'
10752 5' -61.3 NC_002794.1 + 76420 0.66 0.79978
Target:  5'- cGGUCugcaggccaaGCGCCauccucccccgaGCCCGUGgcGCC-CGCCc -3'
miRNA:   3'- -CCAG----------CGCGG------------CGGGCACa-UGGuGCGGc -5'
10752 5' -61.3 NC_002794.1 + 123899 0.66 0.79978
Target:  5'- --cCGC-CCGCCCGaGcUGCCgccucGCGCCGg -3'
miRNA:   3'- ccaGCGcGGCGGGCaC-AUGG-----UGCGGC- -5'
10752 5' -61.3 NC_002794.1 + 55608 0.66 0.79978
Target:  5'- cGG-CGgaaCGCCaGCCCGUGcACgCugGCCa -3'
miRNA:   3'- -CCaGC---GCGG-CGGGCACaUG-GugCGGc -5'
10752 5' -61.3 NC_002794.1 + 186383 0.66 0.79978
Target:  5'- cGUCGuCGCCGCagCCGca-GCCGCgGCCGc -3'
miRNA:   3'- cCAGC-GCGGCG--GGCacaUGGUG-CGGC- -5'
10752 5' -61.3 NC_002794.1 + 109411 0.66 0.798941
Target:  5'- --gCGaCGCCgGCCCGUGUACgugcacugagggaC-CGCCGg -3'
miRNA:   3'- ccaGC-GCGG-CGGGCACAUG-------------GuGCGGC- -5'
10752 5' -61.3 NC_002794.1 + 59027 0.66 0.794729
Target:  5'- --gCGUGCUGCCCGcgcucaccaacaACCGCGCCu -3'
miRNA:   3'- ccaGCGCGGCGGGCaca---------UGGUGCGGc -5'
10752 5' -61.3 NC_002794.1 + 158110 0.66 0.791335
Target:  5'- cGGUCGCGCCGuagcgggagaCCCG-GUAucuuauucagcUCGCGgCGa -3'
miRNA:   3'- -CCAGCGCGGC----------GGGCaCAU-----------GGUGCgGC- -5'
10752 5' -61.3 NC_002794.1 + 12066 0.66 0.791335
Target:  5'- gGGcCGCGCCGCCgaUGaacACgACGCUGa -3'
miRNA:   3'- -CCaGCGCGGCGGgcACa--UGgUGCGGC- -5'
10752 5' -61.3 NC_002794.1 + 12373 0.66 0.791335
Target:  5'- cGG-CGUGCuCGCCUGccgcgcucGCCugGCCGa -3'
miRNA:   3'- -CCaGCGCG-GCGGGCaca-----UGGugCGGC- -5'
10752 5' -61.3 NC_002794.1 + 123583 0.66 0.791335
Target:  5'- cGG-C-CGCCGCCCGUGcagcguCCcggaACGCCu -3'
miRNA:   3'- -CCaGcGCGGCGGGCACau----GG----UGCGGc -5'
10752 5' -61.3 NC_002794.1 + 102479 0.66 0.791335
Target:  5'- cGG-CGUGCCGgCCGgcuuCCACGUCc -3'
miRNA:   3'- -CCaGCGCGGCgGGCacauGGUGCGGc -5'
10752 5' -61.3 NC_002794.1 + 156312 0.66 0.791335
Target:  5'- cGUCGCGCgGCCUaga-GCCACcCCGg -3'
miRNA:   3'- cCAGCGCGgCGGGcacaUGGUGcGGC- -5'
10752 5' -61.3 NC_002794.1 + 194069 0.66 0.791335
Target:  5'- ---aGCGCCGCCUucGUcgccGCCAcCGCCGu -3'
miRNA:   3'- ccagCGCGGCGGGcaCA----UGGU-GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.