Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10753 | 3' | -54.6 | NC_002794.1 | + | 119579 | 1.06 | 0.008256 |
Target: 5'- cUUGACUUCGCCGAACGUCCGUCGCAGu -3' miRNA: 3'- -AACUGAAGCGGCUUGCAGGCAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 55004 | 0.78 | 0.408004 |
Target: 5'- -cGAC-UCGCCGGGCGUCCGcCGCc- -3' miRNA: 3'- aaCUGaAGCGGCUUGCAGGCaGCGuc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 144988 | 0.78 | 0.443205 |
Target: 5'- -cGACcggCGCCGGGCGUCCGccuggCGCAGc -3' miRNA: 3'- aaCUGaa-GCGGCUUGCAGGCa----GCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 40275 | 0.76 | 0.537926 |
Target: 5'- gUGAUUucgggUCGCCGcuacGCGUCCGUCGCGc -3' miRNA: 3'- aACUGA-----AGCGGCu---UGCAGGCAGCGUc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 57937 | 0.74 | 0.628472 |
Target: 5'- -cGACUUCGCCGAcGCG-CUG-CGCAGc -3' miRNA: 3'- aaCUGAAGCGGCU-UGCaGGCaGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 143885 | 0.74 | 0.638642 |
Target: 5'- aUGGCcUCGCCGAGCGUCCuGUUGa-- -3' miRNA: 3'- aACUGaAGCGGCUUGCAGG-CAGCguc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 186086 | 0.74 | 0.638642 |
Target: 5'- -cGcCUUCGCCGGGCGcUUCGUCGCc- -3' miRNA: 3'- aaCuGAAGCGGCUUGC-AGGCAGCGuc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 65150 | 0.71 | 0.76732 |
Target: 5'- -cGACUgggUCGCCGuccCGUCCGUgGCGc -3' miRNA: 3'- aaCUGA---AGCGGCuu-GCAGGCAgCGUc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 136937 | 0.71 | 0.776638 |
Target: 5'- gUUGACggCGCCGAGauaGUCCc-CGCAGg -3' miRNA: 3'- -AACUGaaGCGGCUUg--CAGGcaGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 67673 | 0.71 | 0.812549 |
Target: 5'- -aGACcUCGCCGA----CCGUCGCGGa -3' miRNA: 3'- aaCUGaAGCGGCUugcaGGCAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 188798 | 0.71 | 0.812549 |
Target: 5'- -cGGCccCGCCGAGCG-CCGUC-CAGg -3' miRNA: 3'- aaCUGaaGCGGCUUGCaGGCAGcGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 144793 | 0.7 | 0.821993 |
Target: 5'- cUGGCUUCucuguacgaggaguuCCGGGCGUCCGUgcaCGCGGa -3' miRNA: 3'- aACUGAAGc--------------GGCUUGCAGGCA---GCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 141681 | 0.7 | 0.845877 |
Target: 5'- -aGACgggUCGCCGuacGCGgucCCGUCGUGGc -3' miRNA: 3'- aaCUGa--AGCGGCu--UGCa--GGCAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 31000 | 0.7 | 0.845877 |
Target: 5'- -gGuCUUCGCCGGACGUcgCCGcCGCc- -3' miRNA: 3'- aaCuGAAGCGGCUUGCA--GGCaGCGuc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 124396 | 0.69 | 0.888667 |
Target: 5'- -cGGCgcgUCGCCGGucgucggggcgcCGUCCGcCGCGGu -3' miRNA: 3'- aaCUGa--AGCGGCUu-----------GCAGGCaGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 103818 | 0.69 | 0.890015 |
Target: 5'- -cGGCggCGCCG-ACGUggaGUCGCAGg -3' miRNA: 3'- aaCUGaaGCGGCuUGCAgg-CAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 12228 | 0.68 | 0.902986 |
Target: 5'- -cGGCggCGCCGGcgGCG-CCGUcCGCGGc -3' miRNA: 3'- aaCUGaaGCGGCU--UGCaGGCA-GCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 126596 | 0.68 | 0.902986 |
Target: 5'- -gGACUgagCGCCGAggccgGCGccgaCGUCGCGGc -3' miRNA: 3'- aaCUGAa--GCGGCU-----UGCag--GCAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 141589 | 0.68 | 0.915035 |
Target: 5'- aUGACgcccgcgUCGCCGGGCGgcucggcgaCCGgcUCGCGGu -3' miRNA: 3'- aACUGa------AGCGGCUUGCa--------GGC--AGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 191667 | 0.68 | 0.915035 |
Target: 5'- -gGACggCGCCGGcagcggcggcgGCGUgcccUCGUCGCGGa -3' miRNA: 3'- aaCUGaaGCGGCU-----------UGCA----GGCAGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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