miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10753 3' -54.6 NC_002794.1 + 126596 0.68 0.902986
Target:  5'- -gGACUgagCGCCGAggccgGCGccgaCGUCGCGGc -3'
miRNA:   3'- aaCUGAa--GCGGCU-----UGCag--GCAGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 12228 0.68 0.902986
Target:  5'- -cGGCggCGCCGGcgGCG-CCGUcCGCGGc -3'
miRNA:   3'- aaCUGaaGCGGCU--UGCaGGCA-GCGUC- -5'
10753 3' -54.6 NC_002794.1 + 103818 0.69 0.890015
Target:  5'- -cGGCggCGCCG-ACGUggaGUCGCAGg -3'
miRNA:   3'- aaCUGaaGCGGCuUGCAgg-CAGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 124396 0.69 0.888667
Target:  5'- -cGGCgcgUCGCCGGucgucggggcgcCGUCCGcCGCGGu -3'
miRNA:   3'- aaCUGa--AGCGGCUu-----------GCAGGCaGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 141681 0.7 0.845877
Target:  5'- -aGACgggUCGCCGuacGCGgucCCGUCGUGGc -3'
miRNA:   3'- aaCUGa--AGCGGCu--UGCa--GGCAGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 31000 0.7 0.845877
Target:  5'- -gGuCUUCGCCGGACGUcgCCGcCGCc- -3'
miRNA:   3'- aaCuGAAGCGGCUUGCA--GGCaGCGuc -5'
10753 3' -54.6 NC_002794.1 + 144793 0.7 0.821993
Target:  5'- cUGGCUUCucuguacgaggaguuCCGGGCGUCCGUgcaCGCGGa -3'
miRNA:   3'- aACUGAAGc--------------GGCUUGCAGGCA---GCGUC- -5'
10753 3' -54.6 NC_002794.1 + 67673 0.71 0.812549
Target:  5'- -aGACcUCGCCGA----CCGUCGCGGa -3'
miRNA:   3'- aaCUGaAGCGGCUugcaGGCAGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 188798 0.71 0.812549
Target:  5'- -cGGCccCGCCGAGCG-CCGUC-CAGg -3'
miRNA:   3'- aaCUGaaGCGGCUUGCaGGCAGcGUC- -5'
10753 3' -54.6 NC_002794.1 + 136937 0.71 0.776638
Target:  5'- gUUGACggCGCCGAGauaGUCCc-CGCAGg -3'
miRNA:   3'- -AACUGaaGCGGCUUg--CAGGcaGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 65150 0.71 0.76732
Target:  5'- -cGACUgggUCGCCGuccCGUCCGUgGCGc -3'
miRNA:   3'- aaCUGA---AGCGGCuu-GCAGGCAgCGUc -5'
10753 3' -54.6 NC_002794.1 + 186086 0.74 0.638642
Target:  5'- -cGcCUUCGCCGGGCGcUUCGUCGCc- -3'
miRNA:   3'- aaCuGAAGCGGCUUGC-AGGCAGCGuc -5'
10753 3' -54.6 NC_002794.1 + 143885 0.74 0.638642
Target:  5'- aUGGCcUCGCCGAGCGUCCuGUUGa-- -3'
miRNA:   3'- aACUGaAGCGGCUUGCAGG-CAGCguc -5'
10753 3' -54.6 NC_002794.1 + 57937 0.74 0.628472
Target:  5'- -cGACUUCGCCGAcGCG-CUG-CGCAGc -3'
miRNA:   3'- aaCUGAAGCGGCU-UGCaGGCaGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 40275 0.76 0.537926
Target:  5'- gUGAUUucgggUCGCCGcuacGCGUCCGUCGCGc -3'
miRNA:   3'- aACUGA-----AGCGGCu---UGCAGGCAGCGUc -5'
10753 3' -54.6 NC_002794.1 + 144988 0.78 0.443205
Target:  5'- -cGACcggCGCCGGGCGUCCGccuggCGCAGc -3'
miRNA:   3'- aaCUGaa-GCGGCUUGCAGGCa----GCGUC- -5'
10753 3' -54.6 NC_002794.1 + 55004 0.78 0.408004
Target:  5'- -cGAC-UCGCCGGGCGUCCGcCGCc- -3'
miRNA:   3'- aaCUGaAGCGGCUUGCAGGCaGCGuc -5'
10753 3' -54.6 NC_002794.1 + 119579 1.06 0.008256
Target:  5'- cUUGACUUCGCCGAACGUCCGUCGCAGu -3'
miRNA:   3'- -AACUGAAGCGGCUUGCAGGCAGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.