Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10753 | 3' | -54.6 | NC_002794.1 | + | 12228 | 0.68 | 0.902986 |
Target: 5'- -cGGCggCGCCGGcgGCG-CCGUcCGCGGc -3' miRNA: 3'- aaCUGaaGCGGCU--UGCaGGCA-GCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 31000 | 0.7 | 0.845877 |
Target: 5'- -gGuCUUCGCCGGACGUcgCCGcCGCc- -3' miRNA: 3'- aaCuGAAGCGGCUUGCA--GGCaGCGuc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 40275 | 0.76 | 0.537926 |
Target: 5'- gUGAUUucgggUCGCCGcuacGCGUCCGUCGCGc -3' miRNA: 3'- aACUGA-----AGCGGCu---UGCAGGCAGCGUc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 40603 | 0.66 | 0.957661 |
Target: 5'- -cGAgUcgUCGCCG-GCGUCCGacucCGCGGa -3' miRNA: 3'- aaCUgA--AGCGGCuUGCAGGCa---GCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 55004 | 0.78 | 0.408004 |
Target: 5'- -cGAC-UCGCCGGGCGUCCGcCGCc- -3' miRNA: 3'- aaCUGaAGCGGCUUGCAGGCaGCGuc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 57937 | 0.74 | 0.628472 |
Target: 5'- -cGACUUCGCCGAcGCG-CUG-CGCAGc -3' miRNA: 3'- aaCUGAAGCGGCU-UGCaGGCaGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 61865 | 0.67 | 0.931349 |
Target: 5'- -gGACgaCGCCGcGCG-CCGUCGuCGGc -3' miRNA: 3'- aaCUGaaGCGGCuUGCaGGCAGC-GUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 65150 | 0.71 | 0.76732 |
Target: 5'- -cGACUgggUCGCCGuccCGUCCGUgGCGc -3' miRNA: 3'- aaCUGA---AGCGGCuu-GCAGGCAgCGUc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 67673 | 0.71 | 0.812549 |
Target: 5'- -aGACcUCGCCGA----CCGUCGCGGa -3' miRNA: 3'- aaCUGaAGCGGCUugcaGGCAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 76292 | 0.67 | 0.945544 |
Target: 5'- --aGCUUCGCCccGAGCGUCUGggccCGCGc -3' miRNA: 3'- aacUGAAGCGG--CUUGCAGGCa---GCGUc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 78405 | 0.66 | 0.959123 |
Target: 5'- -aGGCcUCGCCGcgacucuccgcucccGGCGUCacgGUCGCGGc -3' miRNA: 3'- aaCUGaAGCGGC---------------UUGCAGg--CAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 91821 | 0.67 | 0.953848 |
Target: 5'- cUGACggaggacgCGCUGAACGacgcCUGUCGCAc -3' miRNA: 3'- aACUGaa------GCGGCUUGCa---GGCAGCGUc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 98956 | 0.67 | 0.94981 |
Target: 5'- -gGGCUcgUGCUGGGCG-CCGUCGgCGGc -3' miRNA: 3'- aaCUGAa-GCGGCUUGCaGGCAGC-GUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 100739 | 0.66 | 0.961252 |
Target: 5'- cUGACgcgCGCgGAgcGCGUCUaucgcuggccgGUCGCGGa -3' miRNA: 3'- aACUGaa-GCGgCU--UGCAGG-----------CAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 103818 | 0.69 | 0.890015 |
Target: 5'- -cGGCggCGCCG-ACGUggaGUCGCAGg -3' miRNA: 3'- aaCUGaaGCGGCuUGCAgg-CAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 110209 | 0.66 | 0.961252 |
Target: 5'- -aGGggUCGCUcaGGACGUCCGUC-CGGa -3' miRNA: 3'- aaCUgaAGCGG--CUUGCAGGCAGcGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 118181 | 0.67 | 0.953848 |
Target: 5'- -cGGCgacgCGCCGAcCuUCCGUCGCc- -3' miRNA: 3'- aaCUGaa--GCGGCUuGcAGGCAGCGuc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 119579 | 1.06 | 0.008256 |
Target: 5'- cUUGACUUCGCCGAACGUCCGUCGCAGu -3' miRNA: 3'- -AACUGAAGCGGCUUGCAGGCAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 120096 | 0.67 | 0.94981 |
Target: 5'- -cGACcgUGCCGAGCGcgCCG-CGCGu -3' miRNA: 3'- aaCUGaaGCGGCUUGCa-GGCaGCGUc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 123440 | 0.68 | 0.920709 |
Target: 5'- gUGACcgUCGCCGAGCGgcuggCCGa-GCAc -3' miRNA: 3'- aACUGa-AGCGGCUUGCa----GGCagCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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