Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10753 | 3' | -54.6 | NC_002794.1 | + | 124396 | 0.69 | 0.888667 |
Target: 5'- -cGGCgcgUCGCCGGucgucggggcgcCGUCCGcCGCGGu -3' miRNA: 3'- aaCUGa--AGCGGCUu-----------GCAGGCaGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 124979 | 0.66 | 0.961252 |
Target: 5'- -gGAUcgCGCCGcACGUCCG-CGCc- -3' miRNA: 3'- aaCUGaaGCGGCuUGCAGGCaGCGuc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 126596 | 0.68 | 0.902986 |
Target: 5'- -gGACUgagCGCCGAggccgGCGccgaCGUCGCGGc -3' miRNA: 3'- aaCUGAa--GCGGCU-----UGCag--GCAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 129844 | 0.66 | 0.961252 |
Target: 5'- -aGGCggaGCgGAACcUCCGUCGCGa -3' miRNA: 3'- aaCUGaagCGgCUUGcAGGCAGCGUc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 136937 | 0.71 | 0.776638 |
Target: 5'- gUUGACggCGCCGAGauaGUCCc-CGCAGg -3' miRNA: 3'- -AACUGaaGCGGCUUg--CAGGcaGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 137644 | 0.66 | 0.964627 |
Target: 5'- cUGGCgggCGCCGGGCcUCCGgCGCc- -3' miRNA: 3'- aACUGaa-GCGGCUUGcAGGCaGCGuc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 141589 | 0.68 | 0.915035 |
Target: 5'- aUGACgcccgcgUCGCCGGGCGgcucggcgaCCGgcUCGCGGu -3' miRNA: 3'- aACUGa------AGCGGCUUGCa--------GGC--AGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 141681 | 0.7 | 0.845877 |
Target: 5'- -aGACgggUCGCCGuacGCGgucCCGUCGUGGc -3' miRNA: 3'- aaCUGa--AGCGGCu--UGCa--GGCAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 143885 | 0.74 | 0.638642 |
Target: 5'- aUGGCcUCGCCGAGCGUCCuGUUGa-- -3' miRNA: 3'- aACUGaAGCGGCUUGCAGG-CAGCguc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 144793 | 0.7 | 0.821993 |
Target: 5'- cUGGCUUCucuguacgaggaguuCCGGGCGUCCGUgcaCGCGGa -3' miRNA: 3'- aACUGAAGc--------------GGCUUGCAGGCA---GCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 144988 | 0.78 | 0.443205 |
Target: 5'- -cGACcggCGCCGGGCGUCCGccuggCGCAGc -3' miRNA: 3'- aaCUGaa-GCGGCUUGCAGGCa----GCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 145917 | 0.66 | 0.96779 |
Target: 5'- -cGACcgCGCCGAGCGgaggggCCGgcgagaGCGGu -3' miRNA: 3'- aaCUGaaGCGGCUUGCa-----GGCag----CGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 154923 | 0.66 | 0.956916 |
Target: 5'- cUGACgaacaucugcgCGUCGAugGcCUGUUGCAGa -3' miRNA: 3'- aACUGaa---------GCGGCUugCaGGCAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 180906 | 0.67 | 0.953848 |
Target: 5'- -gGACUcggccgcggucUCGCCG-GCG-CCGUCGgAGg -3' miRNA: 3'- aaCUGA-----------AGCGGCuUGCaGGCAGCgUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 186086 | 0.74 | 0.638642 |
Target: 5'- -cGcCUUCGCCGGGCGcUUCGUCGCc- -3' miRNA: 3'- aaCuGAAGCGGCUUGC-AGGCAGCGuc -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 188798 | 0.71 | 0.812549 |
Target: 5'- -cGGCccCGCCGAGCG-CCGUC-CAGg -3' miRNA: 3'- aaCUGaaGCGGCUUGCaGGCAGcGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 191667 | 0.68 | 0.915035 |
Target: 5'- -gGACggCGCCGGcagcggcggcgGCGUgcccUCGUCGCGGa -3' miRNA: 3'- aaCUGaaGCGGCU-----------UGCA----GGCAGCGUC- -5' |
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10753 | 3' | -54.6 | NC_002794.1 | + | 192671 | 0.67 | 0.953848 |
Target: 5'- -cGACUcgaagCGCCGGcCG-CCGUCGUAc -3' miRNA: 3'- aaCUGAa----GCGGCUuGCaGGCAGCGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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