miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10753 3' -54.6 NC_002794.1 + 192671 0.67 0.953848
Target:  5'- -cGACUcgaagCGCCGGcCG-CCGUCGUAc -3'
miRNA:   3'- aaCUGAa----GCGGCUuGCaGGCAGCGUc -5'
10753 3' -54.6 NC_002794.1 + 191667 0.68 0.915035
Target:  5'- -gGACggCGCCGGcagcggcggcgGCGUgcccUCGUCGCGGa -3'
miRNA:   3'- aaCUGaaGCGGCU-----------UGCA----GGCAGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 188798 0.71 0.812549
Target:  5'- -cGGCccCGCCGAGCG-CCGUC-CAGg -3'
miRNA:   3'- aaCUGaaGCGGCUUGCaGGCAGcGUC- -5'
10753 3' -54.6 NC_002794.1 + 186086 0.74 0.638642
Target:  5'- -cGcCUUCGCCGGGCGcUUCGUCGCc- -3'
miRNA:   3'- aaCuGAAGCGGCUUGC-AGGCAGCGuc -5'
10753 3' -54.6 NC_002794.1 + 180906 0.67 0.953848
Target:  5'- -gGACUcggccgcggucUCGCCG-GCG-CCGUCGgAGg -3'
miRNA:   3'- aaCUGA-----------AGCGGCuUGCaGGCAGCgUC- -5'
10753 3' -54.6 NC_002794.1 + 154923 0.66 0.956916
Target:  5'- cUGACgaacaucugcgCGUCGAugGcCUGUUGCAGa -3'
miRNA:   3'- aACUGaa---------GCGGCUugCaGGCAGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 145917 0.66 0.96779
Target:  5'- -cGACcgCGCCGAGCGgaggggCCGgcgagaGCGGu -3'
miRNA:   3'- aaCUGaaGCGGCUUGCa-----GGCag----CGUC- -5'
10753 3' -54.6 NC_002794.1 + 144988 0.78 0.443205
Target:  5'- -cGACcggCGCCGGGCGUCCGccuggCGCAGc -3'
miRNA:   3'- aaCUGaa-GCGGCUUGCAGGCa----GCGUC- -5'
10753 3' -54.6 NC_002794.1 + 144793 0.7 0.821993
Target:  5'- cUGGCUUCucuguacgaggaguuCCGGGCGUCCGUgcaCGCGGa -3'
miRNA:   3'- aACUGAAGc--------------GGCUUGCAGGCA---GCGUC- -5'
10753 3' -54.6 NC_002794.1 + 143885 0.74 0.638642
Target:  5'- aUGGCcUCGCCGAGCGUCCuGUUGa-- -3'
miRNA:   3'- aACUGaAGCGGCUUGCAGG-CAGCguc -5'
10753 3' -54.6 NC_002794.1 + 141681 0.7 0.845877
Target:  5'- -aGACgggUCGCCGuacGCGgucCCGUCGUGGc -3'
miRNA:   3'- aaCUGa--AGCGGCu--UGCa--GGCAGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 141589 0.68 0.915035
Target:  5'- aUGACgcccgcgUCGCCGGGCGgcucggcgaCCGgcUCGCGGu -3'
miRNA:   3'- aACUGa------AGCGGCUUGCa--------GGC--AGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 137644 0.66 0.964627
Target:  5'- cUGGCgggCGCCGGGCcUCCGgCGCc- -3'
miRNA:   3'- aACUGaa-GCGGCUUGcAGGCaGCGuc -5'
10753 3' -54.6 NC_002794.1 + 136937 0.71 0.776638
Target:  5'- gUUGACggCGCCGAGauaGUCCc-CGCAGg -3'
miRNA:   3'- -AACUGaaGCGGCUUg--CAGGcaGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 129844 0.66 0.961252
Target:  5'- -aGGCggaGCgGAACcUCCGUCGCGa -3'
miRNA:   3'- aaCUGaagCGgCUUGcAGGCAGCGUc -5'
10753 3' -54.6 NC_002794.1 + 126596 0.68 0.902986
Target:  5'- -gGACUgagCGCCGAggccgGCGccgaCGUCGCGGc -3'
miRNA:   3'- aaCUGAa--GCGGCU-----UGCag--GCAGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 124979 0.66 0.961252
Target:  5'- -gGAUcgCGCCGcACGUCCG-CGCc- -3'
miRNA:   3'- aaCUGaaGCGGCuUGCAGGCaGCGuc -5'
10753 3' -54.6 NC_002794.1 + 124396 0.69 0.888667
Target:  5'- -cGGCgcgUCGCCGGucgucggggcgcCGUCCGcCGCGGu -3'
miRNA:   3'- aaCUGa--AGCGGCUu-----------GCAGGCaGCGUC- -5'
10753 3' -54.6 NC_002794.1 + 123440 0.68 0.920709
Target:  5'- gUGACcgUCGCCGAGCGgcuggCCGa-GCAc -3'
miRNA:   3'- aACUGa-AGCGGCUUGCa----GGCagCGUc -5'
10753 3' -54.6 NC_002794.1 + 120096 0.67 0.94981
Target:  5'- -cGACcgUGCCGAGCGcgCCG-CGCGu -3'
miRNA:   3'- aaCUGaaGCGGCUUGCa-GGCaGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.