miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10754 3' -60.9 NC_002794.1 + 193767 0.66 0.788689
Target:  5'- -cGGCcCCGCucGC-UCGCCCGCUc-- -3'
miRNA:   3'- guCCGaGGCGu-CGcAGCGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 116985 0.66 0.788689
Target:  5'- gCAGGUcguucgccgUCCGCGGCGucUCGCCCa----- -3'
miRNA:   3'- -GUCCG---------AGGCGUCGC--AGCGGGcgaacc -5'
10754 3' -60.9 NC_002794.1 + 32560 0.66 0.788689
Target:  5'- -cGGCagCCGCGGauaGUCGCgCGCggcGGu -3'
miRNA:   3'- guCCGa-GGCGUCg--CAGCGgGCGaa-CC- -5'
10754 3' -60.9 NC_002794.1 + 99592 0.66 0.788689
Target:  5'- aGGGCgcggCgGCGGCGcgCGCUCGCg--- -3'
miRNA:   3'- gUCCGa---GgCGUCGCa-GCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 162046 0.66 0.788689
Target:  5'- gGGGCgugagCCGCAccGCGUaacaccuCCCGCUUGu -3'
miRNA:   3'- gUCCGa----GGCGU--CGCAgc-----GGGCGAACc -5'
10754 3' -60.9 NC_002794.1 + 12231 0.66 0.788689
Target:  5'- -cGGCgCCgGCGGCGcCGUCCGCg--- -3'
miRNA:   3'- guCCGaGG-CGUCGCaGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 118252 0.66 0.788689
Target:  5'- gCGGGCUggaggucggCCGgGGCGgcggCGCCgGCgucgGGg -3'
miRNA:   3'- -GUCCGA---------GGCgUCGCa---GCGGgCGaa--CC- -5'
10754 3' -60.9 NC_002794.1 + 115871 0.66 0.788689
Target:  5'- aGGGgUCCGgGGCGUCcggggcGUCCGCggagcgcgGGg -3'
miRNA:   3'- gUCCgAGGCgUCGCAG------CGGGCGaa------CC- -5'
10754 3' -60.9 NC_002794.1 + 64794 0.66 0.779938
Target:  5'- -cGGUUCCGCGGCGagCGaCgCCGCggacGGc -3'
miRNA:   3'- guCCGAGGCGUCGCa-GC-G-GGCGaa--CC- -5'
10754 3' -60.9 NC_002794.1 + 143268 0.66 0.779938
Target:  5'- aAGGC-CCGgccCGGCGcCGgCCGCUcGGg -3'
miRNA:   3'- gUCCGaGGC---GUCGCaGCgGGCGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 68871 0.66 0.779938
Target:  5'- uCGGGCUCgC-CGGCcUCGCCCGUUc-- -3'
miRNA:   3'- -GUCCGAG-GcGUCGcAGCGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 187586 0.66 0.779056
Target:  5'- -cGGCgcggCCGCcgucgcgacgcccGGCGUCGCCCagagccGCU-GGa -3'
miRNA:   3'- guCCGa---GGCG-------------UCGCAGCGGG------CGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 143857 0.66 0.779056
Target:  5'- cCAGGCgaucgccgCCGCGGCGUCaaauaugGCCuCGCc--- -3'
miRNA:   3'- -GUCCGa-------GGCGUCGCAG-------CGG-GCGaacc -5'
10754 3' -60.9 NC_002794.1 + 67418 0.66 0.779056
Target:  5'- -cGGCgccagcgUCgGCGGCGugUCGCgCCGCUUcGGg -3'
miRNA:   3'- guCCG-------AGgCGUCGC--AGCG-GGCGAA-CC- -5'
10754 3' -60.9 NC_002794.1 + 36713 0.66 0.771067
Target:  5'- cCAGGCUCaCGUGGCGcucgcgcaGCCCGUUc-- -3'
miRNA:   3'- -GUCCGAG-GCGUCGCag------CGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 67032 0.66 0.771067
Target:  5'- -cGGCUcCCGCcGCGUCGCggacCCgGCguccgUGGg -3'
miRNA:   3'- guCCGA-GGCGuCGCAGCG----GG-CGa----ACC- -5'
10754 3' -60.9 NC_002794.1 + 186877 0.66 0.771067
Target:  5'- gCGGGCUCgGCucGCGguccggCGUCCGCa-GGa -3'
miRNA:   3'- -GUCCGAGgCGu-CGCa-----GCGGGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 184805 0.66 0.762084
Target:  5'- cCGGGCUCaGCAGCGUCacgggGCaCGCguccGGg -3'
miRNA:   3'- -GUCCGAGgCGUCGCAG-----CGgGCGaa--CC- -5'
10754 3' -60.9 NC_002794.1 + 124271 0.66 0.762084
Target:  5'- -cGGCcagCCGCcGCGccguccgucgUCGCCCGCUUc- -3'
miRNA:   3'- guCCGa--GGCGuCGC----------AGCGGGCGAAcc -5'
10754 3' -60.9 NC_002794.1 + 143761 0.66 0.762084
Target:  5'- gGGGCUCCGCu-CGUCGUCgGUgUGc -3'
miRNA:   3'- gUCCGAGGCGucGCAGCGGgCGaACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.