miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10754 3' -60.9 NC_002794.1 + 99592 0.66 0.788689
Target:  5'- aGGGCgcggCgGCGGCGcgCGCUCGCg--- -3'
miRNA:   3'- gUCCGa---GgCGUCGCa-GCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 162046 0.66 0.788689
Target:  5'- gGGGCgugagCCGCAccGCGUaacaccuCCCGCUUGu -3'
miRNA:   3'- gUCCGa----GGCGU--CGCAgc-----GGGCGAACc -5'
10754 3' -60.9 NC_002794.1 + 12231 0.66 0.788689
Target:  5'- -cGGCgCCgGCGGCGcCGUCCGCg--- -3'
miRNA:   3'- guCCGaGG-CGUCGCaGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 118252 0.66 0.788689
Target:  5'- gCGGGCUggaggucggCCGgGGCGgcggCGCCgGCgucgGGg -3'
miRNA:   3'- -GUCCGA---------GGCgUCGCa---GCGGgCGaa--CC- -5'
10754 3' -60.9 NC_002794.1 + 68871 0.66 0.779938
Target:  5'- uCGGGCUCgC-CGGCcUCGCCCGUUc-- -3'
miRNA:   3'- -GUCCGAG-GcGUCGcAGCGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 67418 0.66 0.779056
Target:  5'- -cGGCgccagcgUCgGCGGCGugUCGCgCCGCUUcGGg -3'
miRNA:   3'- guCCG-------AGgCGUCGC--AGCG-GGCGAA-CC- -5'
10754 3' -60.9 NC_002794.1 + 143857 0.66 0.779056
Target:  5'- cCAGGCgaucgccgCCGCGGCGUCaaauaugGCCuCGCc--- -3'
miRNA:   3'- -GUCCGa-------GGCGUCGCAG-------CGG-GCGaacc -5'
10754 3' -60.9 NC_002794.1 + 187586 0.66 0.779056
Target:  5'- -cGGCgcggCCGCcgucgcgacgcccGGCGUCGCCCagagccGCU-GGa -3'
miRNA:   3'- guCCGa---GGCG-------------UCGCAGCGGG------CGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 64794 0.66 0.779938
Target:  5'- -cGGUUCCGCGGCGagCGaCgCCGCggacGGc -3'
miRNA:   3'- guCCGAGGCGUCGCa-GC-G-GGCGaa--CC- -5'
10754 3' -60.9 NC_002794.1 + 143268 0.66 0.779938
Target:  5'- aAGGC-CCGgccCGGCGcCGgCCGCUcGGg -3'
miRNA:   3'- gUCCGaGGC---GUCGCaGCgGGCGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 115871 0.66 0.788689
Target:  5'- aGGGgUCCGgGGCGUCcggggcGUCCGCggagcgcgGGg -3'
miRNA:   3'- gUCCgAGGCgUCGCAG------CGGGCGaa------CC- -5'
10754 3' -60.9 NC_002794.1 + 94405 0.67 0.696731
Target:  5'- gCGGGgaCCGCGGUGUggggcgCGCCCGacaaccUGGa -3'
miRNA:   3'- -GUCCgaGGCGUCGCA------GCGGGCga----ACC- -5'
10754 3' -60.9 NC_002794.1 + 186299 0.67 0.696731
Target:  5'- cCAGGCggccggucgCCGCGGCG-CGCUCGUc--- -3'
miRNA:   3'- -GUCCGa--------GGCGUCGCaGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 89483 0.67 0.696731
Target:  5'- -cGGC-CUGCGGUGUCuCCCGCgaugcGGg -3'
miRNA:   3'- guCCGaGGCGUCGCAGcGGGCGaa---CC- -5'
10754 3' -60.9 NC_002794.1 + 113295 0.67 0.706277
Target:  5'- --uGCUCggCGCAGCGcUCGUCCGCUa-- -3'
miRNA:   3'- gucCGAG--GCGUCGC-AGCGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 189894 0.67 0.706277
Target:  5'- uCGGGCccgCCGuCAGCGcCGCCgCGCg--- -3'
miRNA:   3'- -GUCCGa--GGC-GUCGCaGCGG-GCGaacc -5'
10754 3' -60.9 NC_002794.1 + 41897 0.67 0.715765
Target:  5'- gUAGcGCUCCaGCAGCG-CGCCacgaGCcccucgUGGg -3'
miRNA:   3'- -GUC-CGAGG-CGUCGCaGCGGg---CGa-----ACC- -5'
10754 3' -60.9 NC_002794.1 + 32159 0.67 0.715765
Target:  5'- --aGCUCCG-AGCgGUgGCCCGCcUGGc -3'
miRNA:   3'- gucCGAGGCgUCG-CAgCGGGCGaACC- -5'
10754 3' -60.9 NC_002794.1 + 36497 0.67 0.72237
Target:  5'- aCAGGCagCGCAccaccucggccagcGUGUCGCCCGUc--- -3'
miRNA:   3'- -GUCCGagGCGU--------------CGCAGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 113872 0.67 0.6775
Target:  5'- cCAGGCgcgcucggCCGCGGCGcgCGUCgGCgcGGu -3'
miRNA:   3'- -GUCCGa-------GGCGUCGCa-GCGGgCGaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.