Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10754 | 3' | -60.9 | NC_002794.1 | + | 36497 | 0.67 | 0.72237 |
Target: 5'- aCAGGCagCGCAccaccucggccagcGUGUCGCCCGUc--- -3' miRNA: 3'- -GUCCGagGCGU--------------CGCAGCGGGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 32159 | 0.67 | 0.715765 |
Target: 5'- --aGCUCCG-AGCgGUgGCCCGCcUGGc -3' miRNA: 3'- gucCGAGGCgUCG-CAgCGGGCGaACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 41897 | 0.67 | 0.715765 |
Target: 5'- gUAGcGCUCCaGCAGCG-CGCCacgaGCcccucgUGGg -3' miRNA: 3'- -GUC-CGAGG-CGUCGCaGCGGg---CGa-----ACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 189894 | 0.67 | 0.706277 |
Target: 5'- uCGGGCccgCCGuCAGCGcCGCCgCGCg--- -3' miRNA: 3'- -GUCCGa--GGC-GUCGCaGCGG-GCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 111646 | 0.68 | 0.628963 |
Target: 5'- uCGGGCgccgcggCCGCGGCcaCGCCCGUc-GGa -3' miRNA: 3'- -GUCCGa------GGCGUCGcaGCGGGCGaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 21663 | 0.68 | 0.628963 |
Target: 5'- -cGGCgguggCgGCGGCGguauUCGCCCGCUccGGc -3' miRNA: 3'- guCCGa----GgCGUCGC----AGCGGGCGAa-CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 186620 | 0.68 | 0.628963 |
Target: 5'- gCAGGuCUCCGcCAGCcgacacaGCCCGCgcgGGu -3' miRNA: 3'- -GUCC-GAGGC-GUCGcag----CGGGCGaa-CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 106263 | 0.68 | 0.619235 |
Target: 5'- -cGGCgagcgCCGC-GCGUCGCgCCGCcucGGa -3' miRNA: 3'- guCCGa----GGCGuCGCAGCG-GGCGaa-CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 185944 | 0.68 | 0.619235 |
Target: 5'- cCAGGCU-CGCGGcCG-CGCCCGUUUc- -3' miRNA: 3'- -GUCCGAgGCGUC-GCaGCGGGCGAAcc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 38460 | 0.68 | 0.628963 |
Target: 5'- -cGGCgcggCCGCGGCG-CGCCCuuUaUGGg -3' miRNA: 3'- guCCGa---GGCGUCGCaGCGGGcgA-ACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 107427 | 0.68 | 0.638694 |
Target: 5'- uGGGCUCUGCGGCGccUCGUgCGUg--- -3' miRNA: 3'- gUCCGAGGCGUCGC--AGCGgGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 14655 | 0.68 | 0.667831 |
Target: 5'- -cGGCgCCGCGGCGUCgGUCCGaCUcgcGGc -3' miRNA: 3'- guCCGaGGCGUCGCAG-CGGGC-GAa--CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 115325 | 0.68 | 0.658135 |
Target: 5'- -cGGUcgCCGCGGCGUCcgGgCCGCUcGGc -3' miRNA: 3'- guCCGa-GGCGUCGCAG--CgGGCGAaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 113482 | 0.68 | 0.648421 |
Target: 5'- cCAGGCUCUGCAGgaGcUCGCgCGCg--- -3' miRNA: 3'- -GUCCGAGGCGUCg-C-AGCGgGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 183008 | 0.68 | 0.667831 |
Target: 5'- gCGGGCgccCCGC-GCG-CGCCCGCc--- -3' miRNA: 3'- -GUCCGa--GGCGuCGCaGCGGGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 76288 | 0.69 | 0.590128 |
Target: 5'- cCAGaGCUUCGCcccgAGCGUCuggGCCCGCgccGGc -3' miRNA: 3'- -GUC-CGAGGCG----UCGCAG---CGGGCGaa-CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 154371 | 0.69 | 0.590128 |
Target: 5'- cCAGGCcgCgGCGGCGgcgggcaCGCCCGUUcgcgUGGu -3' miRNA: 3'- -GUCCGa-GgCGUCGCa------GCGGGCGA----ACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 150799 | 0.69 | 0.609515 |
Target: 5'- cCAGGCcCCGCGGCGgacggcCGagCCGCU-GGa -3' miRNA: 3'- -GUCCGaGGCGUCGCa-----GCg-GGCGAaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 130526 | 0.69 | 0.60369 |
Target: 5'- gCGGGCUgaCCGUgacgauuuccgacgcGGCGUCGCCgCGCacgugUUGGc -3' miRNA: 3'- -GUCCGA--GGCG---------------UCGCAGCGG-GCG-----AACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 114730 | 0.69 | 0.561268 |
Target: 5'- -cGGCUCCGgguucgucgagcCGGCGcCGCCCGCc-GGc -3' miRNA: 3'- guCCGAGGC------------GUCGCaGCGGGCGaaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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