miRNA display CGI


Results 61 - 78 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10754 3' -60.9 NC_002794.1 + 130526 0.69 0.60369
Target:  5'- gCGGGCUgaCCGUgacgauuuccgacgcGGCGUCGCCgCGCacgugUUGGc -3'
miRNA:   3'- -GUCCGA--GGCG---------------UCGCAGCGG-GCG-----AACC- -5'
10754 3' -60.9 NC_002794.1 + 66017 0.69 0.609515
Target:  5'- gAGGCggCCGCGGuCGUCGCCgucguCGUcgGGc -3'
miRNA:   3'- gUCCGa-GGCGUC-GCAGCGG-----GCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 137073 0.7 0.514123
Target:  5'- gCGGGCUCuuCGCGcGCcauGUCGCCCGCUc-- -3'
miRNA:   3'- -GUCCGAG--GCGU-CG---CAGCGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 48914 0.7 0.523433
Target:  5'- gGGGCcgcUCCGCAGCGccagCGCCaggCGCUcGGc -3'
miRNA:   3'- gUCCG---AGGCGUCGCa---GCGG---GCGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 108399 0.7 0.523433
Target:  5'- gAGGCUCCgGCGGCGgCGCCCa----- -3'
miRNA:   3'- gUCCGAGG-CGUCGCaGCGGGcgaacc -5'
10754 3' -60.9 NC_002794.1 + 109437 0.7 0.532807
Target:  5'- gAGGgaCCGcCGGgGUCGCCCGCc--- -3'
miRNA:   3'- gUCCgaGGC-GUCgCAGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 34338 0.7 0.542241
Target:  5'- aAGGCgacggCCGCGcCGUucCGCCCGCUcuaccUGGa -3'
miRNA:   3'- gUCCGa----GGCGUcGCA--GCGGGCGA-----ACC- -5'
10754 3' -60.9 NC_002794.1 + 194136 0.7 0.542241
Target:  5'- gAGGCagcggCCGCAGCaG-CGCCCGCg--- -3'
miRNA:   3'- gUCCGa----GGCGUCG-CaGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 113245 0.7 0.542241
Target:  5'- cCAGGaucucccgCUGCAGCGcgucCGCCCGCUcGGc -3'
miRNA:   3'- -GUCCga------GGCGUCGCa---GCGGGCGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 53245 0.7 0.55173
Target:  5'- -cGGCccgCCGCgccGGCGUCGCCgCGCgacaacgGGg -3'
miRNA:   3'- guCCGa--GGCG---UCGCAGCGG-GCGaa-----CC- -5'
10754 3' -60.9 NC_002794.1 + 156534 0.71 0.495711
Target:  5'- aGGGUUCCGUcGCGUCGgCCGU--GGa -3'
miRNA:   3'- gUCCGAGGCGuCGCAGCgGGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 49614 0.71 0.486617
Target:  5'- gCGGGCgCCgGCGGCGccUCGCCCGCc--- -3'
miRNA:   3'- -GUCCGaGG-CGUCGC--AGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 58535 0.72 0.442411
Target:  5'- gAGGCcuucgCCGCGGCG-CGCgCGCUgcUGGc -3'
miRNA:   3'- gUCCGa----GGCGUCGCaGCGgGCGA--ACC- -5'
10754 3' -60.9 NC_002794.1 + 68918 0.72 0.442411
Target:  5'- gGGGCU-CGCGGCGuccucgUCGCCCGCg-GGc -3'
miRNA:   3'- gUCCGAgGCGUCGC------AGCGGGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 113523 0.74 0.324848
Target:  5'- gGGaGCUCCGCcggcucGGCGUCGCCgGCccGGa -3'
miRNA:   3'- gUC-CGAGGCG------UCGCAGCGGgCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 49021 0.75 0.304309
Target:  5'- -cGGCggCCGCGGCGUCGUCCgGCgcGGu -3'
miRNA:   3'- guCCGa-GGCGUCGCAGCGGG-CGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 54868 0.78 0.195693
Target:  5'- gCGGGCcgCCGCAGCGUCGCcuuagguugaugacCCGgUUGGu -3'
miRNA:   3'- -GUCCGa-GGCGUCGCAGCG--------------GGCgAACC- -5'
10754 3' -60.9 NC_002794.1 + 118789 1.1 0.001262
Target:  5'- uCAGGCUCCGCAGCGUCGCCCGCUUGGg -3'
miRNA:   3'- -GUCCGAGGCGUCGCAGCGGGCGAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.