miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10754 3' -60.9 NC_002794.1 + 150799 0.69 0.609515
Target:  5'- cCAGGCcCCGCGGCGgacggcCGagCCGCU-GGa -3'
miRNA:   3'- -GUCCGaGGCGUCGCa-----GCg-GGCGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 154371 0.69 0.590128
Target:  5'- cCAGGCcgCgGCGGCGgcgggcaCGCCCGUUcgcgUGGu -3'
miRNA:   3'- -GUCCGa-GgCGUCGCa------GCGGGCGA----ACC- -5'
10754 3' -60.9 NC_002794.1 + 76288 0.69 0.590128
Target:  5'- cCAGaGCUUCGCcccgAGCGUCuggGCCCGCgccGGc -3'
miRNA:   3'- -GUC-CGAGGCG----UCGCAG---CGGGCGaa-CC- -5'
10754 3' -60.9 NC_002794.1 + 113482 0.68 0.648421
Target:  5'- cCAGGCUCUGCAGgaGcUCGCgCGCg--- -3'
miRNA:   3'- -GUCCGAGGCGUCg-C-AGCGgGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 21663 0.68 0.628963
Target:  5'- -cGGCgguggCgGCGGCGguauUCGCCCGCUccGGc -3'
miRNA:   3'- guCCGa----GgCGUCGC----AGCGGGCGAa-CC- -5'
10754 3' -60.9 NC_002794.1 + 185944 0.68 0.619235
Target:  5'- cCAGGCU-CGCGGcCG-CGCCCGUUUc- -3'
miRNA:   3'- -GUCCGAgGCGUC-GCaGCGGGCGAAcc -5'
10754 3' -60.9 NC_002794.1 + 183008 0.68 0.667831
Target:  5'- gCGGGCgccCCGC-GCG-CGCCCGCc--- -3'
miRNA:   3'- -GUCCGa--GGCGuCGCaGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 14655 0.68 0.667831
Target:  5'- -cGGCgCCGCGGCGUCgGUCCGaCUcgcGGc -3'
miRNA:   3'- guCCGaGGCGUCGCAG-CGGGC-GAa--CC- -5'
10754 3' -60.9 NC_002794.1 + 106263 0.68 0.619235
Target:  5'- -cGGCgagcgCCGC-GCGUCGCgCCGCcucGGa -3'
miRNA:   3'- guCCGa----GGCGuCGCAGCG-GGCGaa-CC- -5'
10754 3' -60.9 NC_002794.1 + 111646 0.68 0.628963
Target:  5'- uCGGGCgccgcggCCGCGGCcaCGCCCGUc-GGa -3'
miRNA:   3'- -GUCCGa------GGCGUCGcaGCGGGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 115325 0.68 0.658135
Target:  5'- -cGGUcgCCGCGGCGUCcgGgCCGCUcGGc -3'
miRNA:   3'- guCCGa-GGCGUCGCAG--CgGGCGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 107427 0.68 0.638694
Target:  5'- uGGGCUCUGCGGCGccUCGUgCGUg--- -3'
miRNA:   3'- gUCCGAGGCGUCGC--AGCGgGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 38460 0.68 0.628963
Target:  5'- -cGGCgcggCCGCGGCG-CGCCCuuUaUGGg -3'
miRNA:   3'- guCCGa---GGCGUCGCaGCGGGcgA-ACC- -5'
10754 3' -60.9 NC_002794.1 + 186620 0.68 0.628963
Target:  5'- gCAGGuCUCCGcCAGCcgacacaGCCCGCgcgGGu -3'
miRNA:   3'- -GUCC-GAGGC-GUCGcag----CGGGCGaa-CC- -5'
10754 3' -60.9 NC_002794.1 + 94405 0.67 0.696731
Target:  5'- gCGGGgaCCGCGGUGUggggcgCGCCCGacaaccUGGa -3'
miRNA:   3'- -GUCCgaGGCGUCGCA------GCGGGCga----ACC- -5'
10754 3' -60.9 NC_002794.1 + 186299 0.67 0.696731
Target:  5'- cCAGGCggccggucgCCGCGGCG-CGCUCGUc--- -3'
miRNA:   3'- -GUCCGa--------GGCGUCGCaGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 89483 0.67 0.696731
Target:  5'- -cGGC-CUGCGGUGUCuCCCGCgaugcGGg -3'
miRNA:   3'- guCCGaGGCGUCGCAGcGGGCGaa---CC- -5'
10754 3' -60.9 NC_002794.1 + 113295 0.67 0.706277
Target:  5'- --uGCUCggCGCAGCGcUCGUCCGCUa-- -3'
miRNA:   3'- gucCGAG--GCGUCGC-AGCGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 189894 0.67 0.706277
Target:  5'- uCGGGCccgCCGuCAGCGcCGCCgCGCg--- -3'
miRNA:   3'- -GUCCGa--GGC-GUCGCaGCGG-GCGaacc -5'
10754 3' -60.9 NC_002794.1 + 41897 0.67 0.715765
Target:  5'- gUAGcGCUCCaGCAGCG-CGCCacgaGCcccucgUGGg -3'
miRNA:   3'- -GUC-CGAGG-CGUCGCaGCGGg---CGa-----ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.