miRNA display CGI


Results 41 - 60 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10754 3' -60.9 NC_002794.1 + 92244 0.67 0.687136
Target:  5'- aAGGagccCUCgGCGGCGUCGCUgGCggcGGc -3'
miRNA:   3'- gUCC----GAGgCGUCGCAGCGGgCGaa-CC- -5'
10754 3' -60.9 NC_002794.1 + 113872 0.67 0.6775
Target:  5'- cCAGGCgcgcucggCCGCGGCGcgCGUCgGCgcGGu -3'
miRNA:   3'- -GUCCGa-------GGCGUCGCa-GCGGgCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 94405 0.67 0.696731
Target:  5'- gCGGGgaCCGCGGUGUggggcgCGCCCGacaaccUGGa -3'
miRNA:   3'- -GUCCgaGGCGUCGCA------GCGGGCga----ACC- -5'
10754 3' -60.9 NC_002794.1 + 186299 0.67 0.696731
Target:  5'- cCAGGCggccggucgCCGCGGCG-CGCUCGUc--- -3'
miRNA:   3'- -GUCCGa--------GGCGUCGCaGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 41897 0.67 0.715765
Target:  5'- gUAGcGCUCCaGCAGCG-CGCCacgaGCcccucgUGGg -3'
miRNA:   3'- -GUC-CGAGG-CGUCGCaGCGGg---CGa-----ACC- -5'
10754 3' -60.9 NC_002794.1 + 113295 0.67 0.706277
Target:  5'- --uGCUCggCGCAGCGcUCGUCCGCUa-- -3'
miRNA:   3'- gucCGAG--GCGUCGC-AGCGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 189894 0.67 0.706277
Target:  5'- uCGGGCccgCCGuCAGCGcCGCCgCGCg--- -3'
miRNA:   3'- -GUCCGa--GGC-GUCGCaGCGG-GCGaacc -5'
10754 3' -60.9 NC_002794.1 + 186877 0.66 0.771067
Target:  5'- gCGGGCUCgGCucGCGguccggCGUCCGCa-GGa -3'
miRNA:   3'- -GUCCGAGgCGu-CGCa-----GCGGGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 67418 0.66 0.779056
Target:  5'- -cGGCgccagcgUCgGCGGCGugUCGCgCCGCUUcGGg -3'
miRNA:   3'- guCCG-------AGgCGUCGC--AGCG-GGCGAA-CC- -5'
10754 3' -60.9 NC_002794.1 + 143857 0.66 0.779056
Target:  5'- cCAGGCgaucgccgCCGCGGCGUCaaauaugGCCuCGCc--- -3'
miRNA:   3'- -GUCCGa-------GGCGUCGCAG-------CGG-GCGaacc -5'
10754 3' -60.9 NC_002794.1 + 187586 0.66 0.779056
Target:  5'- -cGGCgcggCCGCcgucgcgacgcccGGCGUCGCCCagagccGCU-GGa -3'
miRNA:   3'- guCCGa---GGCG-------------UCGCAGCGGG------CGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 118252 0.66 0.788689
Target:  5'- gCGGGCUggaggucggCCGgGGCGgcggCGCCgGCgucgGGg -3'
miRNA:   3'- -GUCCGA---------GGCgUCGCa---GCGGgCGaa--CC- -5'
10754 3' -60.9 NC_002794.1 + 184347 0.66 0.734542
Target:  5'- aCAGGgUCCGCAGC-UCGCagcggCGCUc-- -3'
miRNA:   3'- -GUCCgAGGCGUCGcAGCGg----GCGAacc -5'
10754 3' -60.9 NC_002794.1 + 114027 0.66 0.752997
Target:  5'- aCAGGCgggGCAGCGgcCGCCCGUa--- -3'
miRNA:   3'- -GUCCGaggCGUCGCa-GCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 57401 0.66 0.743814
Target:  5'- -cGGCUCCgGCGcccGCGUgGCCgGCgugcUGGu -3'
miRNA:   3'- guCCGAGG-CGU---CGCAgCGGgCGa---ACC- -5'
10754 3' -60.9 NC_002794.1 + 157006 0.66 0.743814
Target:  5'- gCGGGC-CCGCGGCca-GCCgGCUUa- -3'
miRNA:   3'- -GUCCGaGGCGUCGcagCGGgCGAAcc -5'
10754 3' -60.9 NC_002794.1 + 427 0.66 0.743814
Target:  5'- cCAGGCUCCGaguGCGcgaaUUGCCCcCggGGg -3'
miRNA:   3'- -GUCCGAGGCgu-CGC----AGCGGGcGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 44020 0.66 0.743814
Target:  5'- -cGGCgUCCGCAGacCGUCGCucuCCGCccccgGGg -3'
miRNA:   3'- guCCG-AGGCGUC--GCAGCG---GGCGaa---CC- -5'
10754 3' -60.9 NC_002794.1 + 76527 0.66 0.734542
Target:  5'- cCAGGCcaccggCCGCGGCGccgacgcggUCGCgCGCcgGGu -3'
miRNA:   3'- -GUCCGa-----GGCGUCGC---------AGCGgGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 53611 0.66 0.752997
Target:  5'- cCGGGCcgCCGCAGCGUCGgaCgGaCgaGGu -3'
miRNA:   3'- -GUCCGa-GGCGUCGCAGCg-GgC-GaaCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.