Results 61 - 78 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10754 | 3' | -60.9 | NC_002794.1 | + | 116985 | 0.66 | 0.788689 |
Target: 5'- gCAGGUcguucgccgUCCGCGGCGucUCGCCCa----- -3' miRNA: 3'- -GUCCG---------AGGCGUCGC--AGCGGGcgaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 67032 | 0.66 | 0.771067 |
Target: 5'- -cGGCUcCCGCcGCGUCGCggacCCgGCguccgUGGg -3' miRNA: 3'- guCCGA-GGCGuCGCAGCG----GG-CGa----ACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 36713 | 0.66 | 0.771067 |
Target: 5'- cCAGGCUCaCGUGGCGcucgcgcaGCCCGUUc-- -3' miRNA: 3'- -GUCCGAG-GCGUCGCag------CGGGCGAacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 76527 | 0.66 | 0.734542 |
Target: 5'- cCAGGCcaccggCCGCGGCGccgacgcggUCGCgCGCcgGGu -3' miRNA: 3'- -GUCCGa-----GGCGUCGC---------AGCGgGCGaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 184347 | 0.66 | 0.734542 |
Target: 5'- aCAGGgUCCGCAGC-UCGCagcggCGCUc-- -3' miRNA: 3'- -GUCCgAGGCGUCGcAGCGg----GCGAacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 44020 | 0.66 | 0.743814 |
Target: 5'- -cGGCgUCCGCAGacCGUCGCucuCCGCccccgGGg -3' miRNA: 3'- guCCG-AGGCGUC--GCAGCG---GGCGaa---CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 427 | 0.66 | 0.743814 |
Target: 5'- cCAGGCUCCGaguGCGcgaaUUGCCCcCggGGg -3' miRNA: 3'- -GUCCGAGGCgu-CGC----AGCGGGcGaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 157006 | 0.66 | 0.743814 |
Target: 5'- gCGGGC-CCGCGGCca-GCCgGCUUa- -3' miRNA: 3'- -GUCCGaGGCGUCGcagCGGgCGAAcc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 57401 | 0.66 | 0.743814 |
Target: 5'- -cGGCUCCgGCGcccGCGUgGCCgGCgugcUGGu -3' miRNA: 3'- guCCGAGG-CGU---CGCAgCGGgCGa---ACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 114027 | 0.66 | 0.752997 |
Target: 5'- aCAGGCgggGCAGCGgcCGCCCGUa--- -3' miRNA: 3'- -GUCCGaggCGUCGCa-GCGGGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 53611 | 0.66 | 0.752997 |
Target: 5'- cCGGGCcgCCGCAGCGUCGgaCgGaCgaGGu -3' miRNA: 3'- -GUCCGa-GGCGUCGCAGCg-GgC-GaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 53053 | 0.66 | 0.752083 |
Target: 5'- -cGGCUCCagcguagGCAGCGcCGCgCCGCc--- -3' miRNA: 3'- guCCGAGG-------CGUCGCaGCG-GGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 94024 | 0.66 | 0.752997 |
Target: 5'- gCGGGUUCCGcCGGCGg-GCCCGagagcGGc -3' miRNA: 3'- -GUCCGAGGC-GUCGCagCGGGCgaa--CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 143761 | 0.66 | 0.762084 |
Target: 5'- gGGGCUCCGCu-CGUCGUCgGUgUGc -3' miRNA: 3'- gUCCGAGGCGucGCAGCGGgCGaACc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 187497 | 0.66 | 0.752997 |
Target: 5'- gAGGC-CgCGCAgGCGgccagggCGCCCGCggaGGa -3' miRNA: 3'- gUCCGaG-GCGU-CGCa------GCGGGCGaa-CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 124271 | 0.66 | 0.762084 |
Target: 5'- -cGGCcagCCGCcGCGccguccgucgUCGCCCGCUUc- -3' miRNA: 3'- guCCGa--GGCGuCGC----------AGCGGGCGAAcc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 184805 | 0.66 | 0.762084 |
Target: 5'- cCGGGCUCaGCAGCGUCacgggGCaCGCguccGGg -3' miRNA: 3'- -GUCCGAGgCGUCGCAG-----CGgGCGaa--CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 193767 | 0.66 | 0.788689 |
Target: 5'- -cGGCcCCGCucGC-UCGCCCGCUc-- -3' miRNA: 3'- guCCGaGGCGu-CGcAGCGGGCGAacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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