Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10754 | 3' | -60.9 | NC_002794.1 | + | 130526 | 0.69 | 0.60369 |
Target: 5'- gCGGGCUgaCCGUgacgauuuccgacgcGGCGUCGCCgCGCacgugUUGGc -3' miRNA: 3'- -GUCCGA--GGCG---------------UCGCAGCGG-GCG-----AACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 150799 | 0.69 | 0.609515 |
Target: 5'- cCAGGCcCCGCGGCGgacggcCGagCCGCU-GGa -3' miRNA: 3'- -GUCCGaGGCGUCGCa-----GCg-GGCGAaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 66017 | 0.69 | 0.609515 |
Target: 5'- gAGGCggCCGCGGuCGUCGCCgucguCGUcgGGc -3' miRNA: 3'- gUCCGa-GGCGUC-GCAGCGG-----GCGaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 106263 | 0.68 | 0.619235 |
Target: 5'- -cGGCgagcgCCGC-GCGUCGCgCCGCcucGGa -3' miRNA: 3'- guCCGa----GGCGuCGCAGCG-GGCGaa-CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 185944 | 0.68 | 0.619235 |
Target: 5'- cCAGGCU-CGCGGcCG-CGCCCGUUUc- -3' miRNA: 3'- -GUCCGAgGCGUC-GCaGCGGGCGAAcc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 38460 | 0.68 | 0.628963 |
Target: 5'- -cGGCgcggCCGCGGCG-CGCCCuuUaUGGg -3' miRNA: 3'- guCCGa---GGCGUCGCaGCGGGcgA-ACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 186620 | 0.68 | 0.628963 |
Target: 5'- gCAGGuCUCCGcCAGCcgacacaGCCCGCgcgGGu -3' miRNA: 3'- -GUCC-GAGGC-GUCGcag----CGGGCGaa-CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 21663 | 0.68 | 0.628963 |
Target: 5'- -cGGCgguggCgGCGGCGguauUCGCCCGCUccGGc -3' miRNA: 3'- guCCGa----GgCGUCGC----AGCGGGCGAa-CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 111646 | 0.68 | 0.628963 |
Target: 5'- uCGGGCgccgcggCCGCGGCcaCGCCCGUc-GGa -3' miRNA: 3'- -GUCCGa------GGCGUCGcaGCGGGCGaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 107427 | 0.68 | 0.638694 |
Target: 5'- uGGGCUCUGCGGCGccUCGUgCGUg--- -3' miRNA: 3'- gUCCGAGGCGUCGC--AGCGgGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 113482 | 0.68 | 0.648421 |
Target: 5'- cCAGGCUCUGCAGgaGcUCGCgCGCg--- -3' miRNA: 3'- -GUCCGAGGCGUCg-C-AGCGgGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 115325 | 0.68 | 0.658135 |
Target: 5'- -cGGUcgCCGCGGCGUCcgGgCCGCUcGGc -3' miRNA: 3'- guCCGa-GGCGUCGCAG--CgGGCGAaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 183008 | 0.68 | 0.667831 |
Target: 5'- gCGGGCgccCCGC-GCG-CGCCCGCc--- -3' miRNA: 3'- -GUCCGa--GGCGuCGCaGCGGGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 14655 | 0.68 | 0.667831 |
Target: 5'- -cGGCgCCGCGGCGUCgGUCCGaCUcgcGGc -3' miRNA: 3'- guCCGaGGCGUCGCAG-CGGGC-GAa--CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 100232 | 0.67 | 0.674603 |
Target: 5'- gAGGuCUUCGagguCGGCGUCaGCCCGCUgacccgcuuccugcUGGa -3' miRNA: 3'- gUCC-GAGGC----GUCGCAG-CGGGCGA--------------ACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 113872 | 0.67 | 0.6775 |
Target: 5'- cCAGGCgcgcucggCCGCGGCGcgCGUCgGCgcGGu -3' miRNA: 3'- -GUCCGa-------GGCGUCGCa-GCGGgCGaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 143093 | 0.67 | 0.687136 |
Target: 5'- gAGGUUgCGCGGCGUguuccaGcCCCGCUcGGc -3' miRNA: 3'- gUCCGAgGCGUCGCAg-----C-GGGCGAaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 92244 | 0.67 | 0.687136 |
Target: 5'- aAGGagccCUCgGCGGCGUCGCUgGCggcGGc -3' miRNA: 3'- gUCC----GAGgCGUCGCAGCGGgCGaa-CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 89483 | 0.67 | 0.696731 |
Target: 5'- -cGGC-CUGCGGUGUCuCCCGCgaugcGGg -3' miRNA: 3'- guCCGaGGCGUCGCAGcGGGCGaa---CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 186299 | 0.67 | 0.696731 |
Target: 5'- cCAGGCggccggucgCCGCGGCG-CGCUCGUc--- -3' miRNA: 3'- -GUCCGa--------GGCGUCGCaGCGGGCGaacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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