miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10754 3' -60.9 NC_002794.1 + 94405 0.67 0.696731
Target:  5'- gCGGGgaCCGCGGUGUggggcgCGCCCGacaaccUGGa -3'
miRNA:   3'- -GUCCgaGGCGUCGCA------GCGGGCga----ACC- -5'
10754 3' -60.9 NC_002794.1 + 113295 0.67 0.706277
Target:  5'- --uGCUCggCGCAGCGcUCGUCCGCUa-- -3'
miRNA:   3'- gucCGAG--GCGUCGC-AGCGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 189894 0.67 0.706277
Target:  5'- uCGGGCccgCCGuCAGCGcCGCCgCGCg--- -3'
miRNA:   3'- -GUCCGa--GGC-GUCGCaGCGG-GCGaacc -5'
10754 3' -60.9 NC_002794.1 + 41897 0.67 0.715765
Target:  5'- gUAGcGCUCCaGCAGCG-CGCCacgaGCcccucgUGGg -3'
miRNA:   3'- -GUC-CGAGG-CGUCGCaGCGGg---CGa-----ACC- -5'
10754 3' -60.9 NC_002794.1 + 32159 0.67 0.715765
Target:  5'- --aGCUCCG-AGCgGUgGCCCGCcUGGc -3'
miRNA:   3'- gucCGAGGCgUCG-CAgCGGGCGaACC- -5'
10754 3' -60.9 NC_002794.1 + 36497 0.67 0.72237
Target:  5'- aCAGGCagCGCAccaccucggccagcGUGUCGCCCGUc--- -3'
miRNA:   3'- -GUCCGagGCGU--------------CGCAGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 49841 0.67 0.72519
Target:  5'- gAGGCgCCGCcauuccgcgucGGCGgCGCCCGCcacccggacgUGGa -3'
miRNA:   3'- gUCCGaGGCG-----------UCGCaGCGGGCGa---------ACC- -5'
10754 3' -60.9 NC_002794.1 + 184347 0.66 0.734542
Target:  5'- aCAGGgUCCGCAGC-UCGCagcggCGCUc-- -3'
miRNA:   3'- -GUCCgAGGCGUCGcAGCGg----GCGAacc -5'
10754 3' -60.9 NC_002794.1 + 76527 0.66 0.734542
Target:  5'- cCAGGCcaccggCCGCGGCGccgacgcggUCGCgCGCcgGGu -3'
miRNA:   3'- -GUCCGa-----GGCGUCGC---------AGCGgGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 44020 0.66 0.743814
Target:  5'- -cGGCgUCCGCAGacCGUCGCucuCCGCccccgGGg -3'
miRNA:   3'- guCCG-AGGCGUC--GCAGCG---GGCGaa---CC- -5'
10754 3' -60.9 NC_002794.1 + 427 0.66 0.743814
Target:  5'- cCAGGCUCCGaguGCGcgaaUUGCCCcCggGGg -3'
miRNA:   3'- -GUCCGAGGCgu-CGC----AGCGGGcGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 57401 0.66 0.743814
Target:  5'- -cGGCUCCgGCGcccGCGUgGCCgGCgugcUGGu -3'
miRNA:   3'- guCCGAGG-CGU---CGCAgCGGgCGa---ACC- -5'
10754 3' -60.9 NC_002794.1 + 157006 0.66 0.743814
Target:  5'- gCGGGC-CCGCGGCca-GCCgGCUUa- -3'
miRNA:   3'- -GUCCGaGGCGUCGcagCGGgCGAAcc -5'
10754 3' -60.9 NC_002794.1 + 53053 0.66 0.752083
Target:  5'- -cGGCUCCagcguagGCAGCGcCGCgCCGCc--- -3'
miRNA:   3'- guCCGAGG-------CGUCGCaGCG-GGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 187497 0.66 0.752997
Target:  5'- gAGGC-CgCGCAgGCGgccagggCGCCCGCggaGGa -3'
miRNA:   3'- gUCCGaG-GCGU-CGCa------GCGGGCGaa-CC- -5'
10754 3' -60.9 NC_002794.1 + 114027 0.66 0.752997
Target:  5'- aCAGGCgggGCAGCGgcCGCCCGUa--- -3'
miRNA:   3'- -GUCCGaggCGUCGCa-GCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 94024 0.66 0.752997
Target:  5'- gCGGGUUCCGcCGGCGg-GCCCGagagcGGc -3'
miRNA:   3'- -GUCCGAGGC-GUCGCagCGGGCgaa--CC- -5'
10754 3' -60.9 NC_002794.1 + 53611 0.66 0.752997
Target:  5'- cCGGGCcgCCGCAGCGUCGgaCgGaCgaGGu -3'
miRNA:   3'- -GUCCGa-GGCGUCGCAGCg-GgC-GaaCC- -5'
10754 3' -60.9 NC_002794.1 + 124271 0.66 0.762084
Target:  5'- -cGGCcagCCGCcGCGccguccgucgUCGCCCGCUUc- -3'
miRNA:   3'- guCCGa--GGCGuCGC----------AGCGGGCGAAcc -5'
10754 3' -60.9 NC_002794.1 + 184805 0.66 0.762084
Target:  5'- cCGGGCUCaGCAGCGUCacgggGCaCGCguccGGg -3'
miRNA:   3'- -GUCCGAGgCGUCGCAG-----CGgGCGaa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.