miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10754 3' -60.9 NC_002794.1 + 57401 0.66 0.743814
Target:  5'- -cGGCUCCgGCGcccGCGUgGCCgGCgugcUGGu -3'
miRNA:   3'- guCCGAGG-CGU---CGCAgCGGgCGa---ACC- -5'
10754 3' -60.9 NC_002794.1 + 58535 0.72 0.442411
Target:  5'- gAGGCcuucgCCGCGGCG-CGCgCGCUgcUGGc -3'
miRNA:   3'- gUCCGa----GGCGUCGCaGCGgGCGA--ACC- -5'
10754 3' -60.9 NC_002794.1 + 64794 0.66 0.779938
Target:  5'- -cGGUUCCGCGGCGagCGaCgCCGCggacGGc -3'
miRNA:   3'- guCCGAGGCGUCGCa-GC-G-GGCGaa--CC- -5'
10754 3' -60.9 NC_002794.1 + 66017 0.69 0.609515
Target:  5'- gAGGCggCCGCGGuCGUCGCCgucguCGUcgGGc -3'
miRNA:   3'- gUCCGa-GGCGUC-GCAGCGG-----GCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 67032 0.66 0.771067
Target:  5'- -cGGCUcCCGCcGCGUCGCggacCCgGCguccgUGGg -3'
miRNA:   3'- guCCGA-GGCGuCGCAGCG----GG-CGa----ACC- -5'
10754 3' -60.9 NC_002794.1 + 67418 0.66 0.779056
Target:  5'- -cGGCgccagcgUCgGCGGCGugUCGCgCCGCUUcGGg -3'
miRNA:   3'- guCCG-------AGgCGUCGC--AGCG-GGCGAA-CC- -5'
10754 3' -60.9 NC_002794.1 + 68871 0.66 0.779938
Target:  5'- uCGGGCUCgC-CGGCcUCGCCCGUUc-- -3'
miRNA:   3'- -GUCCGAG-GcGUCGcAGCGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 68918 0.72 0.442411
Target:  5'- gGGGCU-CGCGGCGuccucgUCGCCCGCg-GGc -3'
miRNA:   3'- gUCCGAgGCGUCGC------AGCGGGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 76288 0.69 0.590128
Target:  5'- cCAGaGCUUCGCcccgAGCGUCuggGCCCGCgccGGc -3'
miRNA:   3'- -GUC-CGAGGCG----UCGCAG---CGGGCGaa-CC- -5'
10754 3' -60.9 NC_002794.1 + 76527 0.66 0.734542
Target:  5'- cCAGGCcaccggCCGCGGCGccgacgcggUCGCgCGCcgGGu -3'
miRNA:   3'- -GUCCGa-----GGCGUCGC---------AGCGgGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 89483 0.67 0.696731
Target:  5'- -cGGC-CUGCGGUGUCuCCCGCgaugcGGg -3'
miRNA:   3'- guCCGaGGCGUCGCAGcGGGCGaa---CC- -5'
10754 3' -60.9 NC_002794.1 + 92244 0.67 0.687136
Target:  5'- aAGGagccCUCgGCGGCGUCGCUgGCggcGGc -3'
miRNA:   3'- gUCC----GAGgCGUCGCAGCGGgCGaa-CC- -5'
10754 3' -60.9 NC_002794.1 + 94024 0.66 0.752997
Target:  5'- gCGGGUUCCGcCGGCGg-GCCCGagagcGGc -3'
miRNA:   3'- -GUCCGAGGC-GUCGCagCGGGCgaa--CC- -5'
10754 3' -60.9 NC_002794.1 + 94405 0.67 0.696731
Target:  5'- gCGGGgaCCGCGGUGUggggcgCGCCCGacaaccUGGa -3'
miRNA:   3'- -GUCCgaGGCGUCGCA------GCGGGCga----ACC- -5'
10754 3' -60.9 NC_002794.1 + 99592 0.66 0.788689
Target:  5'- aGGGCgcggCgGCGGCGcgCGCUCGCg--- -3'
miRNA:   3'- gUCCGa---GgCGUCGCa-GCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 100232 0.67 0.674603
Target:  5'- gAGGuCUUCGagguCGGCGUCaGCCCGCUgacccgcuuccugcUGGa -3'
miRNA:   3'- gUCC-GAGGC----GUCGCAG-CGGGCGA--------------ACC- -5'
10754 3' -60.9 NC_002794.1 + 106263 0.68 0.619235
Target:  5'- -cGGCgagcgCCGC-GCGUCGCgCCGCcucGGa -3'
miRNA:   3'- guCCGa----GGCGuCGCAGCG-GGCGaa-CC- -5'
10754 3' -60.9 NC_002794.1 + 107427 0.68 0.638694
Target:  5'- uGGGCUCUGCGGCGccUCGUgCGUg--- -3'
miRNA:   3'- gUCCGAGGCGUCGC--AGCGgGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 108399 0.7 0.523433
Target:  5'- gAGGCUCCgGCGGCGgCGCCCa----- -3'
miRNA:   3'- gUCCGAGG-CGUCGCaGCGGGcgaacc -5'
10754 3' -60.9 NC_002794.1 + 109437 0.7 0.532807
Target:  5'- gAGGgaCCGcCGGgGUCGCCCGCc--- -3'
miRNA:   3'- gUCCgaGGC-GUCgCAGCGGGCGaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.