Results 41 - 60 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10754 | 3' | -60.9 | NC_002794.1 | + | 111646 | 0.68 | 0.628963 |
Target: 5'- uCGGGCgccgcggCCGCGGCcaCGCCCGUc-GGa -3' miRNA: 3'- -GUCCGa------GGCGUCGcaGCGGGCGaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 113245 | 0.7 | 0.542241 |
Target: 5'- cCAGGaucucccgCUGCAGCGcgucCGCCCGCUcGGc -3' miRNA: 3'- -GUCCga------GGCGUCGCa---GCGGGCGAaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 113295 | 0.67 | 0.706277 |
Target: 5'- --uGCUCggCGCAGCGcUCGUCCGCUa-- -3' miRNA: 3'- gucCGAG--GCGUCGC-AGCGGGCGAacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 113482 | 0.68 | 0.648421 |
Target: 5'- cCAGGCUCUGCAGgaGcUCGCgCGCg--- -3' miRNA: 3'- -GUCCGAGGCGUCg-C-AGCGgGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 113523 | 0.74 | 0.324848 |
Target: 5'- gGGaGCUCCGCcggcucGGCGUCGCCgGCccGGa -3' miRNA: 3'- gUC-CGAGGCG------UCGCAGCGGgCGaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 113872 | 0.67 | 0.6775 |
Target: 5'- cCAGGCgcgcucggCCGCGGCGcgCGUCgGCgcGGu -3' miRNA: 3'- -GUCCGa-------GGCGUCGCa-GCGGgCGaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 114027 | 0.66 | 0.752997 |
Target: 5'- aCAGGCgggGCAGCGgcCGCCCGUa--- -3' miRNA: 3'- -GUCCGaggCGUCGCa-GCGGGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 114730 | 0.69 | 0.561268 |
Target: 5'- -cGGCUCCGgguucgucgagcCGGCGcCGCCCGCc-GGc -3' miRNA: 3'- guCCGAGGC------------GUCGCaGCGGGCGaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 115325 | 0.68 | 0.658135 |
Target: 5'- -cGGUcgCCGCGGCGUCcgGgCCGCUcGGc -3' miRNA: 3'- guCCGa-GGCGUCGCAG--CgGGCGAaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 115871 | 0.66 | 0.788689 |
Target: 5'- aGGGgUCCGgGGCGUCcggggcGUCCGCggagcgcgGGg -3' miRNA: 3'- gUCCgAGGCgUCGCAG------CGGGCGaa------CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 116985 | 0.66 | 0.788689 |
Target: 5'- gCAGGUcguucgccgUCCGCGGCGucUCGCCCa----- -3' miRNA: 3'- -GUCCG---------AGGCGUCGC--AGCGGGcgaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 118252 | 0.66 | 0.788689 |
Target: 5'- gCGGGCUggaggucggCCGgGGCGgcggCGCCgGCgucgGGg -3' miRNA: 3'- -GUCCGA---------GGCgUCGCa---GCGGgCGaa--CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 118789 | 1.1 | 0.001262 |
Target: 5'- uCAGGCUCCGCAGCGUCGCCCGCUUGGg -3' miRNA: 3'- -GUCCGAGGCGUCGCAGCGGGCGAACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 124271 | 0.66 | 0.762084 |
Target: 5'- -cGGCcagCCGCcGCGccguccgucgUCGCCCGCUUc- -3' miRNA: 3'- guCCGa--GGCGuCGC----------AGCGGGCGAAcc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 130526 | 0.69 | 0.60369 |
Target: 5'- gCGGGCUgaCCGUgacgauuuccgacgcGGCGUCGCCgCGCacgugUUGGc -3' miRNA: 3'- -GUCCGA--GGCG---------------UCGCAGCGG-GCG-----AACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 137073 | 0.7 | 0.514123 |
Target: 5'- gCGGGCUCuuCGCGcGCcauGUCGCCCGCUc-- -3' miRNA: 3'- -GUCCGAG--GCGU-CG---CAGCGGGCGAacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 143093 | 0.67 | 0.687136 |
Target: 5'- gAGGUUgCGCGGCGUguuccaGcCCCGCUcGGc -3' miRNA: 3'- gUCCGAgGCGUCGCAg-----C-GGGCGAaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 143268 | 0.66 | 0.779938 |
Target: 5'- aAGGC-CCGgccCGGCGcCGgCCGCUcGGg -3' miRNA: 3'- gUCCGaGGC---GUCGCaGCgGGCGAaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 143761 | 0.66 | 0.762084 |
Target: 5'- gGGGCUCCGCu-CGUCGUCgGUgUGc -3' miRNA: 3'- gUCCGAGGCGucGCAGCGGgCGaACc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 143857 | 0.66 | 0.779056 |
Target: 5'- cCAGGCgaucgccgCCGCGGCGUCaaauaugGCCuCGCc--- -3' miRNA: 3'- -GUCCGa-------GGCGUCGCAG-------CGG-GCGaacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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