Results 61 - 78 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10754 | 3' | -60.9 | NC_002794.1 | + | 150799 | 0.69 | 0.609515 |
Target: 5'- cCAGGCcCCGCGGCGgacggcCGagCCGCU-GGa -3' miRNA: 3'- -GUCCGaGGCGUCGCa-----GCg-GGCGAaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 154371 | 0.69 | 0.590128 |
Target: 5'- cCAGGCcgCgGCGGCGgcgggcaCGCCCGUUcgcgUGGu -3' miRNA: 3'- -GUCCGa-GgCGUCGCa------GCGGGCGA----ACC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 156534 | 0.71 | 0.495711 |
Target: 5'- aGGGUUCCGUcGCGUCGgCCGU--GGa -3' miRNA: 3'- gUCCGAGGCGuCGCAGCgGGCGaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 157006 | 0.66 | 0.743814 |
Target: 5'- gCGGGC-CCGCGGCca-GCCgGCUUa- -3' miRNA: 3'- -GUCCGaGGCGUCGcagCGGgCGAAcc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 162046 | 0.66 | 0.788689 |
Target: 5'- gGGGCgugagCCGCAccGCGUaacaccuCCCGCUUGu -3' miRNA: 3'- gUCCGa----GGCGU--CGCAgc-----GGGCGAACc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 183008 | 0.68 | 0.667831 |
Target: 5'- gCGGGCgccCCGC-GCG-CGCCCGCc--- -3' miRNA: 3'- -GUCCGa--GGCGuCGCaGCGGGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 184347 | 0.66 | 0.734542 |
Target: 5'- aCAGGgUCCGCAGC-UCGCagcggCGCUc-- -3' miRNA: 3'- -GUCCgAGGCGUCGcAGCGg----GCGAacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 184805 | 0.66 | 0.762084 |
Target: 5'- cCGGGCUCaGCAGCGUCacgggGCaCGCguccGGg -3' miRNA: 3'- -GUCCGAGgCGUCGCAG-----CGgGCGaa--CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 185944 | 0.68 | 0.619235 |
Target: 5'- cCAGGCU-CGCGGcCG-CGCCCGUUUc- -3' miRNA: 3'- -GUCCGAgGCGUC-GCaGCGGGCGAAcc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 186299 | 0.67 | 0.696731 |
Target: 5'- cCAGGCggccggucgCCGCGGCG-CGCUCGUc--- -3' miRNA: 3'- -GUCCGa--------GGCGUCGCaGCGGGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 186620 | 0.68 | 0.628963 |
Target: 5'- gCAGGuCUCCGcCAGCcgacacaGCCCGCgcgGGu -3' miRNA: 3'- -GUCC-GAGGC-GUCGcag----CGGGCGaa-CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 186877 | 0.66 | 0.771067 |
Target: 5'- gCGGGCUCgGCucGCGguccggCGUCCGCa-GGa -3' miRNA: 3'- -GUCCGAGgCGu-CGCa-----GCGGGCGaaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 187325 | 0.69 | 0.558401 |
Target: 5'- gGGGUUCCGCAGCcggagcagcagcccGUCGUUCGCg--- -3' miRNA: 3'- gUCCGAGGCGUCG--------------CAGCGGGCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 187497 | 0.66 | 0.752997 |
Target: 5'- gAGGC-CgCGCAgGCGgccagggCGCCCGCggaGGa -3' miRNA: 3'- gUCCGaG-GCGU-CGCa------GCGGGCGaa-CC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 187586 | 0.66 | 0.779056 |
Target: 5'- -cGGCgcggCCGCcgucgcgacgcccGGCGUCGCCCagagccGCU-GGa -3' miRNA: 3'- guCCGa---GGCG-------------UCGCAGCGGG------CGAaCC- -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 189894 | 0.67 | 0.706277 |
Target: 5'- uCGGGCccgCCGuCAGCGcCGCCgCGCg--- -3' miRNA: 3'- -GUCCGa--GGC-GUCGCaGCGG-GCGaacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 193767 | 0.66 | 0.788689 |
Target: 5'- -cGGCcCCGCucGC-UCGCCCGCUc-- -3' miRNA: 3'- guCCGaGGCGu-CGcAGCGGGCGAacc -5' |
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10754 | 3' | -60.9 | NC_002794.1 | + | 194136 | 0.7 | 0.542241 |
Target: 5'- gAGGCagcggCCGCAGCaG-CGCCCGCg--- -3' miRNA: 3'- gUCCGa----GGCGUCG-CaGCGGGCGaacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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