miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10754 3' -60.9 NC_002794.1 + 194136 0.7 0.542241
Target:  5'- gAGGCagcggCCGCAGCaG-CGCCCGCg--- -3'
miRNA:   3'- gUCCGa----GGCGUCG-CaGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 193767 0.66 0.788689
Target:  5'- -cGGCcCCGCucGC-UCGCCCGCUc-- -3'
miRNA:   3'- guCCGaGGCGu-CGcAGCGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 189894 0.67 0.706277
Target:  5'- uCGGGCccgCCGuCAGCGcCGCCgCGCg--- -3'
miRNA:   3'- -GUCCGa--GGC-GUCGCaGCGG-GCGaacc -5'
10754 3' -60.9 NC_002794.1 + 187586 0.66 0.779056
Target:  5'- -cGGCgcggCCGCcgucgcgacgcccGGCGUCGCCCagagccGCU-GGa -3'
miRNA:   3'- guCCGa---GGCG-------------UCGCAGCGGG------CGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 187497 0.66 0.752997
Target:  5'- gAGGC-CgCGCAgGCGgccagggCGCCCGCggaGGa -3'
miRNA:   3'- gUCCGaG-GCGU-CGCa------GCGGGCGaa-CC- -5'
10754 3' -60.9 NC_002794.1 + 187325 0.69 0.558401
Target:  5'- gGGGUUCCGCAGCcggagcagcagcccGUCGUUCGCg--- -3'
miRNA:   3'- gUCCGAGGCGUCG--------------CAGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 186877 0.66 0.771067
Target:  5'- gCGGGCUCgGCucGCGguccggCGUCCGCa-GGa -3'
miRNA:   3'- -GUCCGAGgCGu-CGCa-----GCGGGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 186620 0.68 0.628963
Target:  5'- gCAGGuCUCCGcCAGCcgacacaGCCCGCgcgGGu -3'
miRNA:   3'- -GUCC-GAGGC-GUCGcag----CGGGCGaa-CC- -5'
10754 3' -60.9 NC_002794.1 + 186299 0.67 0.696731
Target:  5'- cCAGGCggccggucgCCGCGGCG-CGCUCGUc--- -3'
miRNA:   3'- -GUCCGa--------GGCGUCGCaGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 185944 0.68 0.619235
Target:  5'- cCAGGCU-CGCGGcCG-CGCCCGUUUc- -3'
miRNA:   3'- -GUCCGAgGCGUC-GCaGCGGGCGAAcc -5'
10754 3' -60.9 NC_002794.1 + 184805 0.66 0.762084
Target:  5'- cCGGGCUCaGCAGCGUCacgggGCaCGCguccGGg -3'
miRNA:   3'- -GUCCGAGgCGUCGCAG-----CGgGCGaa--CC- -5'
10754 3' -60.9 NC_002794.1 + 184347 0.66 0.734542
Target:  5'- aCAGGgUCCGCAGC-UCGCagcggCGCUc-- -3'
miRNA:   3'- -GUCCgAGGCGUCGcAGCGg----GCGAacc -5'
10754 3' -60.9 NC_002794.1 + 183008 0.68 0.667831
Target:  5'- gCGGGCgccCCGC-GCG-CGCCCGCc--- -3'
miRNA:   3'- -GUCCGa--GGCGuCGCaGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 162046 0.66 0.788689
Target:  5'- gGGGCgugagCCGCAccGCGUaacaccuCCCGCUUGu -3'
miRNA:   3'- gUCCGa----GGCGU--CGCAgc-----GGGCGAACc -5'
10754 3' -60.9 NC_002794.1 + 157006 0.66 0.743814
Target:  5'- gCGGGC-CCGCGGCca-GCCgGCUUa- -3'
miRNA:   3'- -GUCCGaGGCGUCGcagCGGgCGAAcc -5'
10754 3' -60.9 NC_002794.1 + 156534 0.71 0.495711
Target:  5'- aGGGUUCCGUcGCGUCGgCCGU--GGa -3'
miRNA:   3'- gUCCGAGGCGuCGCAGCgGGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 154371 0.69 0.590128
Target:  5'- cCAGGCcgCgGCGGCGgcgggcaCGCCCGUUcgcgUGGu -3'
miRNA:   3'- -GUCCGa-GgCGUCGCa------GCGGGCGA----ACC- -5'
10754 3' -60.9 NC_002794.1 + 150799 0.69 0.609515
Target:  5'- cCAGGCcCCGCGGCGgacggcCGagCCGCU-GGa -3'
miRNA:   3'- -GUCCGaGGCGUCGCa-----GCg-GGCGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 143857 0.66 0.779056
Target:  5'- cCAGGCgaucgccgCCGCGGCGUCaaauaugGCCuCGCc--- -3'
miRNA:   3'- -GUCCGa-------GGCGUCGCAG-------CGG-GCGaacc -5'
10754 3' -60.9 NC_002794.1 + 143761 0.66 0.762084
Target:  5'- gGGGCUCCGCu-CGUCGUCgGUgUGc -3'
miRNA:   3'- gUCCGAGGCGucGCAGCGGgCGaACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.