miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10754 3' -60.9 NC_002794.1 + 143268 0.66 0.779938
Target:  5'- aAGGC-CCGgccCGGCGcCGgCCGCUcGGg -3'
miRNA:   3'- gUCCGaGGC---GUCGCaGCgGGCGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 143093 0.67 0.687136
Target:  5'- gAGGUUgCGCGGCGUguuccaGcCCCGCUcGGc -3'
miRNA:   3'- gUCCGAgGCGUCGCAg-----C-GGGCGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 137073 0.7 0.514123
Target:  5'- gCGGGCUCuuCGCGcGCcauGUCGCCCGCUc-- -3'
miRNA:   3'- -GUCCGAG--GCGU-CG---CAGCGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 130526 0.69 0.60369
Target:  5'- gCGGGCUgaCCGUgacgauuuccgacgcGGCGUCGCCgCGCacgugUUGGc -3'
miRNA:   3'- -GUCCGA--GGCG---------------UCGCAGCGG-GCG-----AACC- -5'
10754 3' -60.9 NC_002794.1 + 124271 0.66 0.762084
Target:  5'- -cGGCcagCCGCcGCGccguccgucgUCGCCCGCUUc- -3'
miRNA:   3'- guCCGa--GGCGuCGC----------AGCGGGCGAAcc -5'
10754 3' -60.9 NC_002794.1 + 118789 1.1 0.001262
Target:  5'- uCAGGCUCCGCAGCGUCGCCCGCUUGGg -3'
miRNA:   3'- -GUCCGAGGCGUCGCAGCGGGCGAACC- -5'
10754 3' -60.9 NC_002794.1 + 118252 0.66 0.788689
Target:  5'- gCGGGCUggaggucggCCGgGGCGgcggCGCCgGCgucgGGg -3'
miRNA:   3'- -GUCCGA---------GGCgUCGCa---GCGGgCGaa--CC- -5'
10754 3' -60.9 NC_002794.1 + 116985 0.66 0.788689
Target:  5'- gCAGGUcguucgccgUCCGCGGCGucUCGCCCa----- -3'
miRNA:   3'- -GUCCG---------AGGCGUCGC--AGCGGGcgaacc -5'
10754 3' -60.9 NC_002794.1 + 115871 0.66 0.788689
Target:  5'- aGGGgUCCGgGGCGUCcggggcGUCCGCggagcgcgGGg -3'
miRNA:   3'- gUCCgAGGCgUCGCAG------CGGGCGaa------CC- -5'
10754 3' -60.9 NC_002794.1 + 115325 0.68 0.658135
Target:  5'- -cGGUcgCCGCGGCGUCcgGgCCGCUcGGc -3'
miRNA:   3'- guCCGa-GGCGUCGCAG--CgGGCGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 114730 0.69 0.561268
Target:  5'- -cGGCUCCGgguucgucgagcCGGCGcCGCCCGCc-GGc -3'
miRNA:   3'- guCCGAGGC------------GUCGCaGCGGGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 114027 0.66 0.752997
Target:  5'- aCAGGCgggGCAGCGgcCGCCCGUa--- -3'
miRNA:   3'- -GUCCGaggCGUCGCa-GCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 113872 0.67 0.6775
Target:  5'- cCAGGCgcgcucggCCGCGGCGcgCGUCgGCgcGGu -3'
miRNA:   3'- -GUCCGa-------GGCGUCGCa-GCGGgCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 113523 0.74 0.324848
Target:  5'- gGGaGCUCCGCcggcucGGCGUCGCCgGCccGGa -3'
miRNA:   3'- gUC-CGAGGCG------UCGCAGCGGgCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 113482 0.68 0.648421
Target:  5'- cCAGGCUCUGCAGgaGcUCGCgCGCg--- -3'
miRNA:   3'- -GUCCGAGGCGUCg-C-AGCGgGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 113295 0.67 0.706277
Target:  5'- --uGCUCggCGCAGCGcUCGUCCGCUa-- -3'
miRNA:   3'- gucCGAG--GCGUCGC-AGCGGGCGAacc -5'
10754 3' -60.9 NC_002794.1 + 113245 0.7 0.542241
Target:  5'- cCAGGaucucccgCUGCAGCGcgucCGCCCGCUcGGc -3'
miRNA:   3'- -GUCCga------GGCGUCGCa---GCGGGCGAaCC- -5'
10754 3' -60.9 NC_002794.1 + 111646 0.68 0.628963
Target:  5'- uCGGGCgccgcggCCGCGGCcaCGCCCGUc-GGa -3'
miRNA:   3'- -GUCCGa------GGCGUCGcaGCGGGCGaaCC- -5'
10754 3' -60.9 NC_002794.1 + 109437 0.7 0.532807
Target:  5'- gAGGgaCCGcCGGgGUCGCCCGCc--- -3'
miRNA:   3'- gUCCgaGGC-GUCgCAGCGGGCGaacc -5'
10754 3' -60.9 NC_002794.1 + 108399 0.7 0.523433
Target:  5'- gAGGCUCCgGCGGCGgCGCCCa----- -3'
miRNA:   3'- gUCCGAGG-CGUCGCaGCGGGcgaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.