miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10755 3' -60.3 NC_002794.1 + 146232 0.66 0.823778
Target:  5'- cCUCGGuCGCGGCGUcgucaUCGU-CGUcgACCUc -3'
miRNA:   3'- -GAGCC-GCGUCGCG-----AGCAgGCGa-UGGG- -5'
10755 3' -60.3 NC_002794.1 + 66285 0.66 0.823778
Target:  5'- --aGGgGUccgAGCGCcCGUCCGUccGCCCu -3'
miRNA:   3'- gagCCgCG---UCGCGaGCAGGCGa-UGGG- -5'
10755 3' -60.3 NC_002794.1 + 627 0.66 0.823778
Target:  5'- -cCGGUGUGGCGUUCGccucCCGUc-CCCg -3'
miRNA:   3'- gaGCCGCGUCGCGAGCa---GGCGauGGG- -5'
10755 3' -60.3 NC_002794.1 + 147331 0.66 0.823778
Target:  5'- uUCGGgGCcGauCUCGUgcgCCGCUGCCa -3'
miRNA:   3'- gAGCCgCGuCgcGAGCA---GGCGAUGGg -5'
10755 3' -60.3 NC_002794.1 + 44555 0.66 0.823778
Target:  5'- -cCGGCgGCGGCGCccguugaCGUCaCGCgggACCg -3'
miRNA:   3'- gaGCCG-CGUCGCGa------GCAG-GCGa--UGGg -5'
10755 3' -60.3 NC_002794.1 + 116924 0.66 0.823778
Target:  5'- gUCGGCucCGGCG-UCGUCgGCgucCCCg -3'
miRNA:   3'- gAGCCGc-GUCGCgAGCAGgCGau-GGG- -5'
10755 3' -60.3 NC_002794.1 + 76456 0.66 0.823778
Target:  5'- -gUGGCGCc-CGCcccuccacCGUCCGCcgGCCCg -3'
miRNA:   3'- gaGCCGCGucGCGa-------GCAGGCGa-UGGG- -5'
10755 3' -60.3 NC_002794.1 + 68422 0.66 0.823778
Target:  5'- cCUCGGCaCGGUggcccaccaccGCUgGuUCCGCcugGCCCg -3'
miRNA:   3'- -GAGCCGcGUCG-----------CGAgC-AGGCGa--UGGG- -5'
10755 3' -60.3 NC_002794.1 + 125830 0.66 0.823778
Target:  5'- cCUCGGCGCccUGCUgcUgCGCUGCCg -3'
miRNA:   3'- -GAGCCGCGucGCGAgcAgGCGAUGGg -5'
10755 3' -60.3 NC_002794.1 + 145422 0.66 0.823778
Target:  5'- -gCGGCGCGcCGC-CGUCgGCUcacgaGCUCg -3'
miRNA:   3'- gaGCCGCGUcGCGaGCAGgCGA-----UGGG- -5'
10755 3' -60.3 NC_002794.1 + 185174 0.66 0.823778
Target:  5'- -cCGGCGCGGCGCg-GUCgGCg---- -3'
miRNA:   3'- gaGCCGCGUCGCGagCAGgCGauggg -5'
10755 3' -60.3 NC_002794.1 + 112382 0.66 0.822969
Target:  5'- aCUCGGCacgcaggGCGGCGauCUUGgcgcgCUGCaGCCCa -3'
miRNA:   3'- -GAGCCG-------CGUCGC--GAGCa----GGCGaUGGG- -5'
10755 3' -60.3 NC_002794.1 + 187472 0.66 0.819715
Target:  5'- gCUCGGCGC-GCGC-CGggccgaggacgaggCCGCgcaggcggccagggcGCCCg -3'
miRNA:   3'- -GAGCCGCGuCGCGaGCa-------------GGCGa--------------UGGG- -5'
10755 3' -60.3 NC_002794.1 + 26087 0.66 0.818898
Target:  5'- -gCGGgGCAGCGCcgacggccccggcgaUCG-CCGUggGCCUg -3'
miRNA:   3'- gaGCCgCGUCGCG---------------AGCaGGCGa-UGGG- -5'
10755 3' -60.3 NC_002794.1 + 83060 0.66 0.815614
Target:  5'- -aCGaGCGCccacccacgGGCGCaUCGUCCuCUcGCCCa -3'
miRNA:   3'- gaGC-CGCG---------UCGCG-AGCAGGcGA-UGGG- -5'
10755 3' -60.3 NC_002794.1 + 90462 0.66 0.815614
Target:  5'- uUCGGCGaggccGCGCgcggCGgggCCGCcguCCCg -3'
miRNA:   3'- gAGCCGCgu---CGCGa---GCa--GGCGau-GGG- -5'
10755 3' -60.3 NC_002794.1 + 116674 0.66 0.815614
Target:  5'- gCUCGGCG-AGCGUgUCGaUCCGggAgCCg -3'
miRNA:   3'- -GAGCCGCgUCGCG-AGC-AGGCgaUgGG- -5'
10755 3' -60.3 NC_002794.1 + 104414 0.66 0.815614
Target:  5'- -gCGGCcuCGGC-CUCGgCCGCcgGCCCg -3'
miRNA:   3'- gaGCCGc-GUCGcGAGCaGGCGa-UGGG- -5'
10755 3' -60.3 NC_002794.1 + 19656 0.66 0.814789
Target:  5'- -cCGGCGCuGgGUcuucUCGgaguuucUCCGCUACCg -3'
miRNA:   3'- gaGCCGCGuCgCG----AGC-------AGGCGAUGGg -5'
10755 3' -60.3 NC_002794.1 + 84926 0.66 0.807299
Target:  5'- -cCGGCGCggAGCGCUCcccacaCGCggagcGCCCc -3'
miRNA:   3'- gaGCCGCG--UCGCGAGcag---GCGa----UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.