miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10755 3' -60.3 NC_002794.1 + 113296 1.11 0.001146
Target:  5'- gCUCGGCGCAGCGCUCGUCCGCUACCCg -3'
miRNA:   3'- -GAGCCGCGUCGCGAGCAGGCGAUGGG- -5'
10755 3' -60.3 NC_002794.1 + 21936 0.84 0.087956
Target:  5'- -gCGGCGCGGCGCUCGUcgaaggccgucggCCGCU-CCCg -3'
miRNA:   3'- gaGCCGCGUCGCGAGCA-------------GGCGAuGGG- -5'
10755 3' -60.3 NC_002794.1 + 126115 0.8 0.148916
Target:  5'- cCUgGGCGCcGCGCUCGUCUGCgccgguuucuggccgGCCCu -3'
miRNA:   3'- -GAgCCGCGuCGCGAGCAGGCGa--------------UGGG- -5'
10755 3' -60.3 NC_002794.1 + 96425 0.8 0.167684
Target:  5'- uCUCGGCGCGGCGCUCGaUCUcaacgaGCUGCa- -3'
miRNA:   3'- -GAGCCGCGUCGCGAGC-AGG------CGAUGgg -5'
10755 3' -60.3 NC_002794.1 + 59219 0.79 0.175936
Target:  5'- uCUCGGcCGCGGCGCgcgagcucuUCGcgCUGCUGCCCu -3'
miRNA:   3'- -GAGCC-GCGUCGCG---------AGCa-GGCGAUGGG- -5'
10755 3' -60.3 NC_002794.1 + 97686 0.78 0.212646
Target:  5'- uUCGGCGCcgucaacGCGCcCGUCCGCguugUGCCCa -3'
miRNA:   3'- gAGCCGCGu------CGCGaGCAGGCG----AUGGG- -5'
10755 3' -60.3 NC_002794.1 + 84169 0.78 0.2228
Target:  5'- uCUCGGCcCAGCGCUCGgcccggCGCUcgGCCCg -3'
miRNA:   3'- -GAGCCGcGUCGCGAGCag----GCGA--UGGG- -5'
10755 3' -60.3 NC_002794.1 + 68200 0.78 0.2228
Target:  5'- -cCGGCcgcucuacugGCAGCGCUgGUaCCGCUACCUg -3'
miRNA:   3'- gaGCCG----------CGUCGCGAgCA-GGCGAUGGG- -5'
10755 3' -60.3 NC_002794.1 + 51976 0.77 0.228029
Target:  5'- -cCGGCaucGUGGCGCUCGgCCGCUACCg -3'
miRNA:   3'- gaGCCG---CGUCGCGAGCaGGCGAUGGg -5'
10755 3' -60.3 NC_002794.1 + 99603 0.77 0.228029
Target:  5'- -gCGGCGC-GCGCUCGcgCCGCcucgGCCCc -3'
miRNA:   3'- gaGCCGCGuCGCGAGCa-GGCGa---UGGG- -5'
10755 3' -60.3 NC_002794.1 + 31336 0.77 0.233363
Target:  5'- gCUCGGCGCc-CGCcgUGUCCGCcGCCCg -3'
miRNA:   3'- -GAGCCGCGucGCGa-GCAGGCGaUGGG- -5'
10755 3' -60.3 NC_002794.1 + 70350 0.77 0.244344
Target:  5'- --gGGCGCc-CGCUCGUCCGCccACCCg -3'
miRNA:   3'- gagCCGCGucGCGAGCAGGCGa-UGGG- -5'
10755 3' -60.3 NC_002794.1 + 58091 0.76 0.273675
Target:  5'- -cCGGCGCccGCGCUCGaCCGCUGCg- -3'
miRNA:   3'- gaGCCGCGu-CGCGAGCaGGCGAUGgg -5'
10755 3' -60.3 NC_002794.1 + 187897 0.76 0.273675
Target:  5'- uCUCGcGCGguGcCGCUCGcCCGCcggGCCCc -3'
miRNA:   3'- -GAGC-CGCguC-GCGAGCaGGCGa--UGGG- -5'
10755 3' -60.3 NC_002794.1 + 114633 0.76 0.292592
Target:  5'- cCUCGGCGCGGaGCUCGa--GCUGCCg -3'
miRNA:   3'- -GAGCCGCGUCgCGAGCaggCGAUGGg -5'
10755 3' -60.3 NC_002794.1 + 114340 0.75 0.305762
Target:  5'- -cCGcCGCAGCgGCUCGUCCGCcGCCa -3'
miRNA:   3'- gaGCcGCGUCG-CGAGCAGGCGaUGGg -5'
10755 3' -60.3 NC_002794.1 + 12226 0.75 0.31869
Target:  5'- gUCGGCggcgccgGCGGCGC-CGUCCGCgGCgCCg -3'
miRNA:   3'- gAGCCG-------CGUCGCGaGCAGGCGaUG-GG- -5'
10755 3' -60.3 NC_002794.1 + 79774 0.75 0.32636
Target:  5'- aCUUGGCGCGGU--UCGcCCGCUacGCCCg -3'
miRNA:   3'- -GAGCCGCGUCGcgAGCaGGCGA--UGGG- -5'
10755 3' -60.3 NC_002794.1 + 123709 0.75 0.32636
Target:  5'- --gGGCGUgAGCGCgUCGuucuaUCCGCUGCCCc -3'
miRNA:   3'- gagCCGCG-UCGCG-AGC-----AGGCGAUGGG- -5'
10755 3' -60.3 NC_002794.1 + 75655 0.75 0.333451
Target:  5'- -gCGGCaGCGGCGC-CGUCCGCcGCUa -3'
miRNA:   3'- gaGCCG-CGUCGCGaGCAGGCGaUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.