miRNA display CGI


Results 21 - 40 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10755 3' -60.3 NC_002794.1 + 33671 0.66 0.807299
Target:  5'- aCUCGcGCucGCuGCGCUCG-CUGC-GCCUg -3'
miRNA:   3'- -GAGC-CG--CGuCGCGAGCaGGCGaUGGG- -5'
10755 3' -60.3 NC_002794.1 + 182464 0.66 0.807299
Target:  5'- -gCGGCGguGCGCggCGUCaGCagauacaguCCCa -3'
miRNA:   3'- gaGCCGCguCGCGa-GCAGgCGau-------GGG- -5'
10755 3' -60.3 NC_002794.1 + 193282 0.66 0.807299
Target:  5'- -gCGGCGUgcgccgguAGuCGC-CGUCCGCUccGCgCCg -3'
miRNA:   3'- gaGCCGCG--------UC-GCGaGCAGGCGA--UG-GG- -5'
10755 3' -60.3 NC_002794.1 + 84926 0.66 0.807299
Target:  5'- -cCGGCGCggAGCGCUCcccacaCGCggagcGCCCc -3'
miRNA:   3'- gaGCCGCG--UCGCGAGcag---GCGa----UGGG- -5'
10755 3' -60.3 NC_002794.1 + 124270 0.66 0.807299
Target:  5'- -cCGGCcagccGCcGCGC-CGUCCGUcgucGCCCg -3'
miRNA:   3'- gaGCCG-----CGuCGCGaGCAGGCGa---UGGG- -5'
10755 3' -60.3 NC_002794.1 + 135698 0.66 0.798841
Target:  5'- -aCGGUcuccagGUAGCGCUCGagCUGCUGCg- -3'
miRNA:   3'- gaGCCG------CGUCGCGAGCa-GGCGAUGgg -5'
10755 3' -60.3 NC_002794.1 + 38178 0.66 0.798841
Target:  5'- gCUCGGCGacgaaGGCGUuccuggucucgUCGUUCGCgcgcgcgACCg -3'
miRNA:   3'- -GAGCCGCg----UCGCG-----------AGCAGGCGa------UGGg -5'
10755 3' -60.3 NC_002794.1 + 52807 0.66 0.798841
Target:  5'- gUCGGaCGcCGGCaGCUCGUCC--UGCCg -3'
miRNA:   3'- gAGCC-GC-GUCG-CGAGCAGGcgAUGGg -5'
10755 3' -60.3 NC_002794.1 + 186838 0.66 0.798841
Target:  5'- --aGGCGCccgacAGCGCgCGggCGCUGCCg -3'
miRNA:   3'- gagCCGCG-----UCGCGaGCagGCGAUGGg -5'
10755 3' -60.3 NC_002794.1 + 130591 0.66 0.798841
Target:  5'- gUCGG-GCAGCGCUa-UCCGCcgAUCg -3'
miRNA:   3'- gAGCCgCGUCGCGAgcAGGCGa-UGGg -5'
10755 3' -60.3 NC_002794.1 + 83876 0.66 0.798841
Target:  5'- gUCGGCGCGacggccccGgGCUCGgcgcCCGacgaGCCCg -3'
miRNA:   3'- gAGCCGCGU--------CgCGAGCa---GGCga--UGGG- -5'
10755 3' -60.3 NC_002794.1 + 190089 0.66 0.798841
Target:  5'- uCUCGucGCGCAGCucccacgccccGC-CGUCCGC-GCCg -3'
miRNA:   3'- -GAGC--CGCGUCG-----------CGaGCAGGCGaUGGg -5'
10755 3' -60.3 NC_002794.1 + 82644 0.66 0.798841
Target:  5'- -cCGGCGCcagaagcgccGCGCUCGacgCCGC-GCCg -3'
miRNA:   3'- gaGCCGCGu---------CGCGAGCa--GGCGaUGGg -5'
10755 3' -60.3 NC_002794.1 + 66744 0.66 0.790247
Target:  5'- -gUGGCgGCGGCGCguaCGaCCGCUggACCa -3'
miRNA:   3'- gaGCCG-CGUCGCGa--GCaGGCGA--UGGg -5'
10755 3' -60.3 NC_002794.1 + 60029 0.66 0.790247
Target:  5'- gCUCGaCGCcGaCGC-CGUCuCGCUGCUCa -3'
miRNA:   3'- -GAGCcGCGuC-GCGaGCAG-GCGAUGGG- -5'
10755 3' -60.3 NC_002794.1 + 85811 0.66 0.790247
Target:  5'- gCUCGGCuc--CGCUCGgaaCUGCUACCg -3'
miRNA:   3'- -GAGCCGcgucGCGAGCa--GGCGAUGGg -5'
10755 3' -60.3 NC_002794.1 + 193006 0.66 0.790247
Target:  5'- -gCGuGUGCAGCGCcagCGgcguguacaUCUGCUGCCg -3'
miRNA:   3'- gaGC-CGCGUCGCGa--GC---------AGGCGAUGGg -5'
10755 3' -60.3 NC_002794.1 + 66854 0.66 0.790247
Target:  5'- gUCGGCGCGGCGaggccgcggCGUgCgGCUgaGCCa -3'
miRNA:   3'- gAGCCGCGUCGCga-------GCA-GgCGA--UGGg -5'
10755 3' -60.3 NC_002794.1 + 191481 0.66 0.790247
Target:  5'- -gCGGCaGCcacgGGCGaUCGUCCGCcACCg -3'
miRNA:   3'- gaGCCG-CG----UCGCgAGCAGGCGaUGGg -5'
10755 3' -60.3 NC_002794.1 + 99278 0.66 0.790247
Target:  5'- -cCGGCGCGcucccGgGCUCuUCCGCgACCg -3'
miRNA:   3'- gaGCCGCGU-----CgCGAGcAGGCGaUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.