miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10755 5' -56.9 NC_002794.1 + 182338 0.66 0.924328
Target:  5'- gCGGGcgAGCGGACGggcGGGCggGUgacCGg -3'
miRNA:   3'- aGUCCa-UCGCCUGCa--CCCGgaCAa--GC- -5'
10755 5' -56.9 NC_002794.1 + 110478 0.66 0.924328
Target:  5'- cUCGGGggguagagaGGCGGugGcGGcGCCUGgagaaagUCGg -3'
miRNA:   3'- -AGUCCa--------UCGCCugCaCC-CGGACa------AGC- -5'
10755 5' -56.9 NC_002794.1 + 155631 0.66 0.913286
Target:  5'- -aAGGUggccaGGCGGAUGaUGGGUCUGa--- -3'
miRNA:   3'- agUCCA-----UCGCCUGC-ACCCGGACaagc -5'
10755 5' -56.9 NC_002794.1 + 121579 0.67 0.888522
Target:  5'- uUCAGcGUGaCGGGCGcgGGGUC-GUUCGg -3'
miRNA:   3'- -AGUC-CAUcGCCUGCa-CCCGGaCAAGC- -5'
10755 5' -56.9 NC_002794.1 + 115837 0.67 0.881787
Target:  5'- gCGGGgcccGGCGGGCucGGGCCUGggacgCGc -3'
miRNA:   3'- aGUCCa---UCGCCUGcaCCCGGACaa---GC- -5'
10755 5' -56.9 NC_002794.1 + 130591 0.68 0.860337
Target:  5'- gUCGGGcAGCGcuauccgccGAuCGUGGGCCgguugacggUGUUCGg -3'
miRNA:   3'- -AGUCCaUCGC---------CU-GCACCCGG---------ACAAGC- -5'
10755 5' -56.9 NC_002794.1 + 188276 0.68 0.845051
Target:  5'- cCGGGUAGCGGAUGcagGGcGCCgcg-CGc -3'
miRNA:   3'- aGUCCAUCGCCUGCa--CC-CGGacaaGC- -5'
10755 5' -56.9 NC_002794.1 + 176204 0.68 0.83713
Target:  5'- aCGGGUGGCGGAUGgaaGGCUcGcUCGu -3'
miRNA:   3'- aGUCCAUCGCCUGCac-CCGGaCaAGC- -5'
10755 5' -56.9 NC_002794.1 + 80416 0.68 0.83713
Target:  5'- cCAGGUGGCgccGGGCG-GGGCCgccgcCGg -3'
miRNA:   3'- aGUCCAUCG---CCUGCaCCCGGacaa-GC- -5'
10755 5' -56.9 NC_002794.1 + 128483 0.69 0.786141
Target:  5'- cCGGGUcGCGGACcggGGGCCgucccUUCGg -3'
miRNA:   3'- aGUCCAuCGCCUGca-CCCGGac---AAGC- -5'
10755 5' -56.9 NC_002794.1 + 92312 0.69 0.768008
Target:  5'- gCuGGgcGCGGGCGgcggGGGCCcGggCGg -3'
miRNA:   3'- aGuCCauCGCCUGCa---CCCGGaCaaGC- -5'
10755 5' -56.9 NC_002794.1 + 106349 0.73 0.57245
Target:  5'- cCGGGUcgacGGCGGGCG-GGcGCCgGUUCGc -3'
miRNA:   3'- aGUCCA----UCGCCUGCaCC-CGGaCAAGC- -5'
10755 5' -56.9 NC_002794.1 + 113331 1.09 0.00346
Target:  5'- gUCAGGUAGCGGACGUGGGCCUGUUCGu -3'
miRNA:   3'- -AGUCCAUCGCCUGCACCCGGACAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.