miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10756 3' -59.4 NC_002794.1 + 113395 0.66 0.827485
Target:  5'- gCAgGCGCUGcAGCACC-CGGagcugguccagcacgUCGGCGu -3'
miRNA:   3'- -GUgCGUGACaUCGUGGaGCC---------------GGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 57670 0.66 0.825026
Target:  5'- uCACGCAcCUGcccauggacauccuGCACCUCGGCgagaagaacgUGGCGc -3'
miRNA:   3'- -GUGCGU-GACau------------CGUGGAGCCG----------GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 179823 0.66 0.824203
Target:  5'- cCGCGCACUcGUcG-GCCUCGGUCaGCGu -3'
miRNA:   3'- -GUGCGUGA-CAuCgUGGAGCCGGcCGU- -5'
10756 3' -59.4 NC_002794.1 + 126123 0.66 0.824203
Target:  5'- -cCGCGCUcGUcuGCGCCgguuucUGGCCGGCc -3'
miRNA:   3'- guGCGUGA-CAu-CGUGGa-----GCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 190197 0.66 0.824203
Target:  5'- cCACGCGCUccAGCGCCgcgCGcacccGCCgGGCGc -3'
miRNA:   3'- -GUGCGUGAcaUCGUGGa--GC-----CGG-CCGU- -5'
10756 3' -59.4 NC_002794.1 + 90319 0.66 0.815886
Target:  5'- uCGCGCACUGgccgcAGCuggugGCCgUCGGCCuGuGCGu -3'
miRNA:   3'- -GUGCGUGACa----UCG-----UGG-AGCCGG-C-CGU- -5'
10756 3' -59.4 NC_002794.1 + 98960 0.66 0.815886
Target:  5'- -uCGUGCUG-GGCGCCgUCGG-CGGCGc -3'
miRNA:   3'- guGCGUGACaUCGUGG-AGCCgGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 72214 0.66 0.815886
Target:  5'- gCGgGCGCUGUcggaAGaaCACgaUGGCCGGCAc -3'
miRNA:   3'- -GUgCGUGACA----UC--GUGgaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 13022 0.66 0.807412
Target:  5'- gCACGCGcCUGUu---CCUCGGguaCCGGCGu -3'
miRNA:   3'- -GUGCGU-GACAucguGGAGCC---GGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 59588 0.66 0.807412
Target:  5'- gCGCGCACUGcccgcAGCAgcucuCCUCcGuGCUGGCGc -3'
miRNA:   3'- -GUGCGUGACa----UCGU-----GGAG-C-CGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 95021 0.66 0.807412
Target:  5'- gGCgGCugUGcGGCAUCUCG-CCGGUg -3'
miRNA:   3'- gUG-CGugACaUCGUGGAGCcGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 20713 0.66 0.807412
Target:  5'- -uCGCACgaa--CACCUgGGCUGGCAg -3'
miRNA:   3'- guGCGUGacaucGUGGAgCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 43232 0.66 0.807412
Target:  5'- gAUGCGCUGcAGCGgCacCGGCCGGa- -3'
miRNA:   3'- gUGCGUGACaUCGUgGa-GCCGGCCgu -5'
10756 3' -59.4 NC_002794.1 + 23954 0.66 0.802256
Target:  5'- gGCGCACU-UGGCuCCgagccagcggcgaGGCCGGCGc -3'
miRNA:   3'- gUGCGUGAcAUCGuGGag-----------CCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 45366 0.66 0.790025
Target:  5'- aCACGCACgUGcgcgAGC-CCgUCGGCCacacgGGCAc -3'
miRNA:   3'- -GUGCGUG-ACa---UCGuGG-AGCCGG-----CCGU- -5'
10756 3' -59.4 NC_002794.1 + 57392 0.66 0.790025
Target:  5'- cUACGUcaccgGCUccGGCGCCcgcgUGGCCGGCGu -3'
miRNA:   3'- -GUGCG-----UGAcaUCGUGGa---GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 78666 0.66 0.790025
Target:  5'- uCugGCACUc---CACCUCGGCCgccGGCc -3'
miRNA:   3'- -GugCGUGAcaucGUGGAGCCGG---CCGu -5'
10756 3' -59.4 NC_002794.1 + 93995 0.66 0.790025
Target:  5'- gCGCGgACgccGGCGCCggcggCgGGCCGGCGg -3'
miRNA:   3'- -GUGCgUGacaUCGUGGa----G-CCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 70896 0.66 0.790025
Target:  5'- aGCGCcagGUcggugAGCACgUCGGCCaGGCGa -3'
miRNA:   3'- gUGCGugaCA-----UCGUGgAGCCGG-CCGU- -5'
10756 3' -59.4 NC_002794.1 + 55626 0.66 0.790025
Target:  5'- uGCaCGCUGgccAGCACgCg-GGCCGGCAg -3'
miRNA:   3'- gUGcGUGACa--UCGUG-GagCCGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.