miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10756 3' -59.4 NC_002794.1 + 104608 0.68 0.696399
Target:  5'- gAUGCGCUcgcGCAgCUCGGCCaGCAg -3'
miRNA:   3'- gUGCGUGAcauCGUgGAGCCGGcCGU- -5'
10756 3' -59.4 NC_002794.1 + 145777 0.68 0.676802
Target:  5'- cCACGCGgaGUcGUcCC-CGGCCGGCu -3'
miRNA:   3'- -GUGCGUgaCAuCGuGGaGCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 126423 0.68 0.686621
Target:  5'- uCugGCuGCUGgucgaggugugGGCGCCUCGGCCcuggguccGGCu -3'
miRNA:   3'- -GugCG-UGACa----------UCGUGGAGCCGG--------CCGu -5'
10756 3' -59.4 NC_002794.1 + 155671 0.68 0.675817
Target:  5'- aGCGCAgauacucCUGUGGCAgaUCGGCuCGGUg -3'
miRNA:   3'- gUGCGU-------GACAUCGUggAGCCG-GCCGu -5'
10756 3' -59.4 NC_002794.1 + 116062 0.68 0.706126
Target:  5'- aGCGCgACUGgggucgcggAGCG-CUCGGCgCGGCGg -3'
miRNA:   3'- gUGCG-UGACa--------UCGUgGAGCCG-GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 106963 0.68 0.715794
Target:  5'- aCACGCGuCgccucGCGCggCGGCCGGCAc -3'
miRNA:   3'- -GUGCGU-Gacau-CGUGgaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 151633 0.68 0.706126
Target:  5'- --gGCACU-UGGCucGCCgcCGGCCGGCAc -3'
miRNA:   3'- gugCGUGAcAUCG--UGGa-GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 194741 0.68 0.729216
Target:  5'- cCACGCaccGCUGcAGCAcccacggcgacugcuCCgagaaCGGCCGGCAc -3'
miRNA:   3'- -GUGCG---UGACaUCGU---------------GGa----GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 119688 0.68 0.725396
Target:  5'- gGCGU-CUccGGCugCUgGGCCGGCGg -3'
miRNA:   3'- gUGCGuGAcaUCGugGAgCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 32251 0.68 0.725396
Target:  5'- -cUGCAgCUGcUGGCGCUcgaCGGCCGGCc -3'
miRNA:   3'- guGCGU-GAC-AUCGUGGa--GCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 71306 0.68 0.725396
Target:  5'- gGCGCGCUcgGGCggcgagcgcgccACCUCGG-CGGCGa -3'
miRNA:   3'- gUGCGUGAcaUCG------------UGGAGCCgGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 134295 0.68 0.725396
Target:  5'- aGCGCcucuucgaucgGCUGUGuCGCCUCGcGCCGGa- -3'
miRNA:   3'- gUGCG-----------UGACAUcGUGGAGC-CGGCCgu -5'
10756 3' -59.4 NC_002794.1 + 78911 0.68 0.724439
Target:  5'- gCACGUACUccGUcccgucgGGCACC-CGccGCCGGCAg -3'
miRNA:   3'- -GUGCGUGA--CA-------UCGUGGaGC--CGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 114538 0.68 0.715794
Target:  5'- cCGCGCgaGCUGcgcgAGCuguuCUUCGGCCaGGCGc -3'
miRNA:   3'- -GUGCG--UGACa---UCGu---GGAGCCGG-CCGU- -5'
10756 3' -59.4 NC_002794.1 + 38004 0.68 0.715794
Target:  5'- cCACGCcguaggcCUGcAGCGCUUCGGgaaagcCCGGCAg -3'
miRNA:   3'- -GUGCGu------GACaUCGUGGAGCC------GGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 58683 0.69 0.627342
Target:  5'- aCGCGCACUaccgccAGCugCUCGGgCUGGUg -3'
miRNA:   3'- -GUGCGUGAca----UCGugGAGCC-GGCCGu -5'
10756 3' -59.4 NC_002794.1 + 118727 0.69 0.657066
Target:  5'- gCGCGUACUGggcGCugCUCGGCgcgcucaGGCc -3'
miRNA:   3'- -GUGCGUGACau-CGugGAGCCGg------CCGu -5'
10756 3' -59.4 NC_002794.1 + 61873 0.69 0.647167
Target:  5'- cCGCGCGCcGUcgucGGCGCCgcgCGGCgagcgCGGCGa -3'
miRNA:   3'- -GUGCGUGaCA----UCGUGGa--GCCG-----GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 66833 0.69 0.666947
Target:  5'- gGCGCgACUccgGGCGCCgccgUCGGCgCGGCGa -3'
miRNA:   3'- gUGCG-UGAca-UCGUGG----AGCCG-GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 60852 0.69 0.637256
Target:  5'- uCAC-CGCc--GGCgACCUCGGCCGGCu -3'
miRNA:   3'- -GUGcGUGacaUCG-UGGAGCCGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.