miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10756 3' -59.4 NC_002794.1 + 92859 0.7 0.568165
Target:  5'- -uCGCGCUcUAcGcCGCCUCgGGCCGGCAc -3'
miRNA:   3'- guGCGUGAcAU-C-GUGGAG-CCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 66833 0.69 0.666947
Target:  5'- gGCGCgACUccgGGCGCCgccgUCGGCgCGGCGa -3'
miRNA:   3'- gUGCG-UGAca-UCGUGG----AGCCG-GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 61873 0.69 0.647167
Target:  5'- cCGCGCGCcGUcgucGGCGCCgcgCGGCgagcgCGGCGa -3'
miRNA:   3'- -GUGCGUGaCA----UCGUGGa--GCCG-----GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 118727 0.69 0.657066
Target:  5'- gCGCGUACUGggcGCugCUCGGCgcgcucaGGCc -3'
miRNA:   3'- -GUGCGUGACau-CGugGAGCCGg------CCGu -5'
10756 3' -59.4 NC_002794.1 + 60852 0.69 0.637256
Target:  5'- uCAC-CGCc--GGCgACCUCGGCCGGCu -3'
miRNA:   3'- -GUGcGUGacaUCG-UGGAGCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 58683 0.69 0.627342
Target:  5'- aCGCGCACUaccgccAGCugCUCGGgCUGGUg -3'
miRNA:   3'- -GUGCGUGAca----UCGugGAGCC-GGCCGu -5'
10756 3' -59.4 NC_002794.1 + 145569 0.69 0.657066
Target:  5'- uCGCGgACg--AGCGCCgacggagcggCGGCCGGCu -3'
miRNA:   3'- -GUGCgUGacaUCGUGGa---------GCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 119688 0.68 0.725396
Target:  5'- gGCGU-CUccGGCugCUgGGCCGGCGg -3'
miRNA:   3'- gUGCGuGAcaUCGugGAgCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 32251 0.68 0.725396
Target:  5'- -cUGCAgCUGcUGGCGCUcgaCGGCCGGCc -3'
miRNA:   3'- guGCGU-GAC-AUCGUGGa--GCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 71306 0.68 0.725396
Target:  5'- gGCGCGCUcgGGCggcgagcgcgccACCUCGG-CGGCGa -3'
miRNA:   3'- gUGCGUGAcaUCG------------UGGAGCCgGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 18810 0.68 0.696399
Target:  5'- --gGCcaACggGUcGGCgACCUCGGCCGGCGc -3'
miRNA:   3'- gugCG--UGa-CA-UCG-UGGAGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 194741 0.68 0.729216
Target:  5'- cCACGCaccGCUGcAGCAcccacggcgacugcuCCgagaaCGGCCGGCAc -3'
miRNA:   3'- -GUGCG---UGACaUCGU---------------GGa----GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 151633 0.68 0.706126
Target:  5'- --gGCACU-UGGCucGCCgcCGGCCGGCAc -3'
miRNA:   3'- gugCGUGAcAUCG--UGGa-GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 104608 0.68 0.696399
Target:  5'- gAUGCGCUcgcGCAgCUCGGCCaGCAg -3'
miRNA:   3'- gUGCGUGAcauCGUgGAGCCGGcCGU- -5'
10756 3' -59.4 NC_002794.1 + 155671 0.68 0.675817
Target:  5'- aGCGCAgauacucCUGUGGCAgaUCGGCuCGGUg -3'
miRNA:   3'- gUGCGU-------GACAUCGUggAGCCG-GCCGu -5'
10756 3' -59.4 NC_002794.1 + 116062 0.68 0.706126
Target:  5'- aGCGCgACUGgggucgcggAGCG-CUCGGCgCGGCGg -3'
miRNA:   3'- gUGCG-UGACa--------UCGUgGAGCCG-GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 106963 0.68 0.715794
Target:  5'- aCACGCGuCgccucGCGCggCGGCCGGCAc -3'
miRNA:   3'- -GUGCGU-Gacau-CGUGgaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 48175 0.68 0.706126
Target:  5'- uCACGcCGCUGcagcggaacuGCGCCaaCGGCCGGCc -3'
miRNA:   3'- -GUGC-GUGACau--------CGUGGa-GCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 40461 0.68 0.704185
Target:  5'- cCGgGCGCUGUcccuucgGGCGgCUcaucgaaCGGCCGGCGc -3'
miRNA:   3'- -GUgCGUGACA-------UCGUgGA-------GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 145777 0.68 0.676802
Target:  5'- cCACGCGgaGUcGUcCC-CGGCCGGCu -3'
miRNA:   3'- -GUGCGUgaCAuCGuGGaGCCGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.