miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10756 3' -59.4 NC_002794.1 + 111243 1.08 0.001899
Target:  5'- aCACGCACUGUAGCACCUCGGCCGGCAg -3'
miRNA:   3'- -GUGCGUGACAUCGUGGAGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 114189 0.74 0.363503
Target:  5'- cCAgGCGCaGcGGCGCCaCGGCCGGCGu -3'
miRNA:   3'- -GUgCGUGaCaUCGUGGaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 14513 0.74 0.387264
Target:  5'- uCGCgGCGCUcGUGGCGCCgcUCGGCCacGGCGc -3'
miRNA:   3'- -GUG-CGUGA-CAUCGUGG--AGCCGG--CCGU- -5'
10756 3' -59.4 NC_002794.1 + 69706 0.73 0.394588
Target:  5'- uCACGCACUgcaucggcaccGUcgagugccgccggAGCGCCaCGGCCGGCGa -3'
miRNA:   3'- -GUGCGUGA-----------CA-------------UCGUGGaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 120853 0.73 0.412024
Target:  5'- uGCGCgGCcGUcguccAGCGCCUCGGCUGGUg -3'
miRNA:   3'- gUGCG-UGaCA-----UCGUGGAGCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 186278 0.73 0.420492
Target:  5'- cCugGCGCgGcGGCACCgCGGCCaGGCGg -3'
miRNA:   3'- -GugCGUGaCaUCGUGGaGCCGG-CCGU- -5'
10756 3' -59.4 NC_002794.1 + 100321 0.72 0.455387
Target:  5'- gCACGCGCggccGGCGCa-CGGCCGGCu -3'
miRNA:   3'- -GUGCGUGaca-UCGUGgaGCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 194107 0.72 0.464353
Target:  5'- aCACGUGCUGcGGCACCgcgcgcaCGGCUgaGGCAg -3'
miRNA:   3'- -GUGCGUGACaUCGUGGa------GCCGG--CCGU- -5'
10756 3' -59.4 NC_002794.1 + 37504 0.72 0.47341
Target:  5'- gCACGCGCgUGUggucgcgcAGCACCacguccCGGCUGGCGa -3'
miRNA:   3'- -GUGCGUG-ACA--------UCGUGGa-----GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 138438 0.72 0.47341
Target:  5'- -cCGCGgUGgcggcGGCGCCUCGGCCuGCGa -3'
miRNA:   3'- guGCGUgACa----UCGUGGAGCCGGcCGU- -5'
10756 3' -59.4 NC_002794.1 + 59204 0.71 0.501095
Target:  5'- aCGCGCACgucGGCGUCUCGGCCgcGGCGc -3'
miRNA:   3'- -GUGCGUGacaUCGUGGAGCCGG--CCGU- -5'
10756 3' -59.4 NC_002794.1 + 195610 0.71 0.519943
Target:  5'- -cCGCGCUGgcGUccgGCCcaaaCGGCCGGCGa -3'
miRNA:   3'- guGCGUGACauCG---UGGa---GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 107757 0.71 0.52947
Target:  5'- gCGCGcCGCUGgcuggAGCGCgCUCGcCCGGCGa -3'
miRNA:   3'- -GUGC-GUGACa----UCGUG-GAGCcGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 113071 0.7 0.558414
Target:  5'- gCAgGUACUccuggAGCGCCUCGGCgaaCGGCGg -3'
miRNA:   3'- -GUgCGUGAca---UCGUGGAGCCG---GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 92859 0.7 0.568165
Target:  5'- -uCGCGCUcUAcGcCGCCUCgGGCCGGCAc -3'
miRNA:   3'- guGCGUGAcAU-C-GUGGAG-CCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 182537 0.7 0.568165
Target:  5'- aGCGCggcaGCgacuGCGCCgCGGCCGGCAc -3'
miRNA:   3'- gUGCG----UGacauCGUGGaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 188344 0.7 0.577958
Target:  5'- gGCgGCGCcGUcGCGCCcgucCGGCCGGCGg -3'
miRNA:   3'- gUG-CGUGaCAuCGUGGa---GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 56302 0.7 0.597647
Target:  5'- gCGCGCGCgGUcgcggucgcuGGCgGCCgUGGCCGGCGa -3'
miRNA:   3'- -GUGCGUGaCA----------UCG-UGGaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 121944 0.7 0.606541
Target:  5'- gACGCGCUGaucgAGCGCCUggagcgcuccgugCGGCuCGGUc -3'
miRNA:   3'- gUGCGUGACa---UCGUGGA-------------GCCG-GCCGu -5'
10756 3' -59.4 NC_002794.1 + 56465 0.7 0.60753
Target:  5'- gGCGCGCUGc-GCGCCUUcgaaacgaGGCCGGa- -3'
miRNA:   3'- gUGCGUGACauCGUGGAG--------CCGGCCgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.