miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10756 3' -59.4 NC_002794.1 + 123556 0.66 0.790025
Target:  5'- cCGCGgGCUGUucgccuucgAGCGCCaCGGCCGccgcccguGCAg -3'
miRNA:   3'- -GUGCgUGACA---------UCGUGGaGCCGGC--------CGU- -5'
10756 3' -59.4 NC_002794.1 + 113153 0.67 0.781127
Target:  5'- gCGCGUcaGCgUGUAGCGCgCgCGGgCGGCGg -3'
miRNA:   3'- -GUGCG--UG-ACAUCGUG-GaGCCgGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 26083 0.67 0.781127
Target:  5'- cCACGCGggGcAGCGCCgaCGGCCccGGCGa -3'
miRNA:   3'- -GUGCGUgaCaUCGUGGa-GCCGG--CCGU- -5'
10756 3' -59.4 NC_002794.1 + 141439 0.67 0.781127
Target:  5'- gGCGC-CgggGGCGCCgggagCGGCgCGGCGu -3'
miRNA:   3'- gUGCGuGacaUCGUGGa----GCCG-GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 57598 0.67 0.781127
Target:  5'- cCGCGCGC-GUGGcCACCgagaaggCGGCCGaCGa -3'
miRNA:   3'- -GUGCGUGaCAUC-GUGGa------GCCGGCcGU- -5'
10756 3' -59.4 NC_002794.1 + 141305 0.67 0.781127
Target:  5'- gGCGCGCcGgcgacGGCACCggcgUCGGCuCGGUg -3'
miRNA:   3'- gUGCGUGaCa----UCGUGG----AGCCG-GCCGu -5'
10756 3' -59.4 NC_002794.1 + 58644 0.67 0.772104
Target:  5'- cCACGCAgCUGggcgacgGGCugCUgCaGCCGGCc -3'
miRNA:   3'- -GUGCGU-GACa------UCGugGA-GcCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 36503 0.67 0.772104
Target:  5'- aGCGCAC-----CACCUCGGCCaGCGu -3'
miRNA:   3'- gUGCGUGacaucGUGGAGCCGGcCGU- -5'
10756 3' -59.4 NC_002794.1 + 126253 0.67 0.762963
Target:  5'- gGCGCGCgagGUcGGCGgCU-GGCUGGCGg -3'
miRNA:   3'- gUGCGUGa--CA-UCGUgGAgCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 79675 0.67 0.753714
Target:  5'- aCGCGCGCUGcuuccucgAGCAgCUCGgGCCGccGCu -3'
miRNA:   3'- -GUGCGUGACa-------UCGUgGAGC-CGGC--CGu -5'
10756 3' -59.4 NC_002794.1 + 75580 0.67 0.753714
Target:  5'- -cCGCGCaGUGGCugC-CGGCCGccgcGCAa -3'
miRNA:   3'- guGCGUGaCAUCGugGaGCCGGC----CGU- -5'
10756 3' -59.4 NC_002794.1 + 32576 0.67 0.744364
Target:  5'- uCGCGCGCgGcGGUGCCggGGCCGGg- -3'
miRNA:   3'- -GUGCGUGaCaUCGUGGagCCGGCCgu -5'
10756 3' -59.4 NC_002794.1 + 113875 0.67 0.743424
Target:  5'- gGCGCGCUcggccgcGgcGCGCgUCGGCgCGGUc -3'
miRNA:   3'- gUGCGUGA-------CauCGUGgAGCCG-GCCGu -5'
10756 3' -59.4 NC_002794.1 + 100742 0.67 0.743424
Target:  5'- aCGCGCGCgg-AGCGCgUCuaucgcuGGCCGGUc -3'
miRNA:   3'- -GUGCGUGacaUCGUGgAG-------CCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 126595 0.67 0.734922
Target:  5'- --gGgACUG-AGCGCCgaGGCCGGCGc -3'
miRNA:   3'- gugCgUGACaUCGUGGagCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 19514 0.67 0.734922
Target:  5'- uCGCGcCGCUcggAGCGCCggcgCGGCgCGGCc -3'
miRNA:   3'- -GUGC-GUGAca-UCGUGGa---GCCG-GCCGu -5'
10756 3' -59.4 NC_002794.1 + 194741 0.68 0.729216
Target:  5'- cCACGCaccGCUGcAGCAcccacggcgacugcuCCgagaaCGGCCGGCAc -3'
miRNA:   3'- -GUGCG---UGACaUCGU---------------GGa----GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 32251 0.68 0.725396
Target:  5'- -cUGCAgCUGcUGGCGCUcgaCGGCCGGCc -3'
miRNA:   3'- guGCGU-GAC-AUCGUGGa--GCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 71306 0.68 0.725396
Target:  5'- gGCGCGCUcgGGCggcgagcgcgccACCUCGG-CGGCGa -3'
miRNA:   3'- gUGCGUGAcaUCG------------UGGAGCCgGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 134295 0.68 0.725396
Target:  5'- aGCGCcucuucgaucgGCUGUGuCGCCUCGcGCCGGa- -3'
miRNA:   3'- gUGCG-----------UGACAUcGUGGAGC-CGGCCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.