miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10756 3' -59.4 NC_002794.1 + 13022 0.66 0.807412
Target:  5'- gCACGCGcCUGUu---CCUCGGguaCCGGCGu -3'
miRNA:   3'- -GUGCGU-GACAucguGGAGCC---GGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 14513 0.74 0.387264
Target:  5'- uCGCgGCGCUcGUGGCGCCgcUCGGCCacGGCGc -3'
miRNA:   3'- -GUG-CGUGA-CAUCGUGG--AGCCGG--CCGU- -5'
10756 3' -59.4 NC_002794.1 + 18810 0.68 0.696399
Target:  5'- --gGCcaACggGUcGGCgACCUCGGCCGGCGc -3'
miRNA:   3'- gugCG--UGa-CA-UCG-UGGAGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 19514 0.67 0.734922
Target:  5'- uCGCGcCGCUcggAGCGCCggcgCGGCgCGGCc -3'
miRNA:   3'- -GUGC-GUGAca-UCGUGGa---GCCG-GCCGu -5'
10756 3' -59.4 NC_002794.1 + 20713 0.66 0.807412
Target:  5'- -uCGCACgaa--CACCUgGGCUGGCAg -3'
miRNA:   3'- guGCGUGacaucGUGGAgCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 23954 0.66 0.802256
Target:  5'- gGCGCACU-UGGCuCCgagccagcggcgaGGCCGGCGc -3'
miRNA:   3'- gUGCGUGAcAUCGuGGag-----------CCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 24016 0.68 0.706126
Target:  5'- -cCGuCACcGcGGCGCCUCGGCgaCGGCGg -3'
miRNA:   3'- guGC-GUGaCaUCGUGGAGCCG--GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 26083 0.67 0.781127
Target:  5'- cCACGCGggGcAGCGCCgaCGGCCccGGCGa -3'
miRNA:   3'- -GUGCGUgaCaUCGUGGa-GCCGG--CCGU- -5'
10756 3' -59.4 NC_002794.1 + 32251 0.68 0.725396
Target:  5'- -cUGCAgCUGcUGGCGCUcgaCGGCCGGCc -3'
miRNA:   3'- guGCGU-GAC-AUCGUGGa--GCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 32576 0.67 0.744364
Target:  5'- uCGCGCGCgGcGGUGCCggGGCCGGg- -3'
miRNA:   3'- -GUGCGUGaCaUCGUGGagCCGGCCgu -5'
10756 3' -59.4 NC_002794.1 + 36503 0.67 0.772104
Target:  5'- aGCGCAC-----CACCUCGGCCaGCGu -3'
miRNA:   3'- gUGCGUGacaucGUGGAGCCGGcCGU- -5'
10756 3' -59.4 NC_002794.1 + 37504 0.72 0.47341
Target:  5'- gCACGCGCgUGUggucgcgcAGCACCacguccCGGCUGGCGa -3'
miRNA:   3'- -GUGCGUG-ACA--------UCGUGGa-----GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 38004 0.68 0.715794
Target:  5'- cCACGCcguaggcCUGcAGCGCUUCGGgaaagcCCGGCAg -3'
miRNA:   3'- -GUGCGu------GACaUCGUGGAGCC------GGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 40461 0.68 0.704185
Target:  5'- cCGgGCGCUGUcccuucgGGCGgCUcaucgaaCGGCCGGCGc -3'
miRNA:   3'- -GUgCGUGACA-------UCGUgGA-------GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 43232 0.66 0.807412
Target:  5'- gAUGCGCUGcAGCGgCacCGGCCGGa- -3'
miRNA:   3'- gUGCGUGACaUCGUgGa-GCCGGCCgu -5'
10756 3' -59.4 NC_002794.1 + 45366 0.66 0.790025
Target:  5'- aCACGCACgUGcgcgAGC-CCgUCGGCCacacgGGCAc -3'
miRNA:   3'- -GUGCGUG-ACa---UCGuGG-AGCCGG-----CCGU- -5'
10756 3' -59.4 NC_002794.1 + 48051 0.7 0.60753
Target:  5'- uGCGUGCUGggcacGGCGCUgauGGCCGGCc -3'
miRNA:   3'- gUGCGUGACa----UCGUGGag-CCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 48175 0.68 0.706126
Target:  5'- uCACGcCGCUGcagcggaacuGCGCCaaCGGCCGGCc -3'
miRNA:   3'- -GUGC-GUGACau--------CGUGGa-GCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 55626 0.66 0.790025
Target:  5'- uGCaCGCUGgccAGCACgCg-GGCCGGCAg -3'
miRNA:   3'- gUGcGUGACa--UCGUG-GagCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 56302 0.7 0.597647
Target:  5'- gCGCGCGCgGUcgcggucgcuGGCgGCCgUGGCCGGCGa -3'
miRNA:   3'- -GUGCGUGaCA----------UCG-UGGaGCCGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.