miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10756 3' -59.4 NC_002794.1 + 56465 0.7 0.60753
Target:  5'- gGCGCGCUGc-GCGCCUUcgaaacgaGGCCGGa- -3'
miRNA:   3'- gUGCGUGACauCGUGGAG--------CCGGCCgu -5'
10756 3' -59.4 NC_002794.1 + 57392 0.66 0.790025
Target:  5'- cUACGUcaccgGCUccGGCGCCcgcgUGGCCGGCGu -3'
miRNA:   3'- -GUGCG-----UGAcaUCGUGGa---GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 57598 0.67 0.781127
Target:  5'- cCGCGCGC-GUGGcCACCgagaaggCGGCCGaCGa -3'
miRNA:   3'- -GUGCGUGaCAUC-GUGGa------GCCGGCcGU- -5'
10756 3' -59.4 NC_002794.1 + 57670 0.66 0.825026
Target:  5'- uCACGCAcCUGcccauggacauccuGCACCUCGGCgagaagaacgUGGCGc -3'
miRNA:   3'- -GUGCGU-GACau------------CGUGGAGCCG----------GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 58644 0.67 0.772104
Target:  5'- cCACGCAgCUGggcgacgGGCugCUgCaGCCGGCc -3'
miRNA:   3'- -GUGCGU-GACa------UCGugGA-GcCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 58683 0.69 0.627342
Target:  5'- aCGCGCACUaccgccAGCugCUCGGgCUGGUg -3'
miRNA:   3'- -GUGCGUGAca----UCGugGAGCC-GGCCGu -5'
10756 3' -59.4 NC_002794.1 + 59204 0.71 0.501095
Target:  5'- aCGCGCACgucGGCGUCUCGGCCgcGGCGc -3'
miRNA:   3'- -GUGCGUGacaUCGUGGAGCCGG--CCGU- -5'
10756 3' -59.4 NC_002794.1 + 59588 0.66 0.807412
Target:  5'- gCGCGCACUGcccgcAGCAgcucuCCUCcGuGCUGGCGc -3'
miRNA:   3'- -GUGCGUGACa----UCGU-----GGAG-C-CGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 60852 0.69 0.637256
Target:  5'- uCAC-CGCc--GGCgACCUCGGCCGGCu -3'
miRNA:   3'- -GUGcGUGacaUCG-UGGAGCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 61873 0.69 0.647167
Target:  5'- cCGCGCGCcGUcgucGGCGCCgcgCGGCgagcgCGGCGa -3'
miRNA:   3'- -GUGCGUGaCA----UCGUGGa--GCCG-----GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 66833 0.69 0.666947
Target:  5'- gGCGCgACUccgGGCGCCgccgUCGGCgCGGCGa -3'
miRNA:   3'- gUGCG-UGAca-UCGUGG----AGCCG-GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 69706 0.73 0.394588
Target:  5'- uCACGCACUgcaucggcaccGUcgagugccgccggAGCGCCaCGGCCGGCGa -3'
miRNA:   3'- -GUGCGUGA-----------CA-------------UCGUGGaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 70896 0.66 0.790025
Target:  5'- aGCGCcagGUcggugAGCACgUCGGCCaGGCGa -3'
miRNA:   3'- gUGCGugaCA-----UCGUGgAGCCGG-CCGU- -5'
10756 3' -59.4 NC_002794.1 + 71306 0.68 0.725396
Target:  5'- gGCGCGCUcgGGCggcgagcgcgccACCUCGG-CGGCGa -3'
miRNA:   3'- gUGCGUGAcaUCG------------UGGAGCCgGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 72214 0.66 0.815886
Target:  5'- gCGgGCGCUGUcggaAGaaCACgaUGGCCGGCAc -3'
miRNA:   3'- -GUgCGUGACA----UC--GUGgaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 75580 0.67 0.753714
Target:  5'- -cCGCGCaGUGGCugC-CGGCCGccgcGCAa -3'
miRNA:   3'- guGCGUGaCAUCGugGaGCCGGC----CGU- -5'
10756 3' -59.4 NC_002794.1 + 78666 0.66 0.790025
Target:  5'- uCugGCACUc---CACCUCGGCCgccGGCc -3'
miRNA:   3'- -GugCGUGAcaucGUGGAGCCGG---CCGu -5'
10756 3' -59.4 NC_002794.1 + 78911 0.68 0.724439
Target:  5'- gCACGUACUccGUcccgucgGGCACC-CGccGCCGGCAg -3'
miRNA:   3'- -GUGCGUGA--CA-------UCGUGGaGC--CGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 79675 0.67 0.753714
Target:  5'- aCGCGCGCUGcuuccucgAGCAgCUCGgGCCGccGCu -3'
miRNA:   3'- -GUGCGUGACa-------UCGUgGAGC-CGGC--CGu -5'
10756 3' -59.4 NC_002794.1 + 90319 0.66 0.815886
Target:  5'- uCGCGCACUGgccgcAGCuggugGCCgUCGGCCuGuGCGu -3'
miRNA:   3'- -GUGCGUGACa----UCG-----UGG-AGCCGG-C-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.