miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10756 3' -59.4 NC_002794.1 + 92859 0.7 0.568165
Target:  5'- -uCGCGCUcUAcGcCGCCUCgGGCCGGCAc -3'
miRNA:   3'- guGCGUGAcAU-C-GUGGAG-CCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 93995 0.66 0.790025
Target:  5'- gCGCGgACgccGGCGCCggcggCgGGCCGGCGg -3'
miRNA:   3'- -GUGCgUGacaUCGUGGa----G-CCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 95021 0.66 0.807412
Target:  5'- gGCgGCugUGcGGCAUCUCG-CCGGUg -3'
miRNA:   3'- gUG-CGugACaUCGUGGAGCcGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 98960 0.66 0.815886
Target:  5'- -uCGUGCUG-GGCGCCgUCGG-CGGCGc -3'
miRNA:   3'- guGCGUGACaUCGUGG-AGCCgGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 100321 0.72 0.455387
Target:  5'- gCACGCGCggccGGCGCa-CGGCCGGCu -3'
miRNA:   3'- -GUGCGUGaca-UCGUGgaGCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 100742 0.67 0.743424
Target:  5'- aCGCGCGCgg-AGCGCgUCuaucgcuGGCCGGUc -3'
miRNA:   3'- -GUGCGUGacaUCGUGgAG-------CCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 104608 0.68 0.696399
Target:  5'- gAUGCGCUcgcGCAgCUCGGCCaGCAg -3'
miRNA:   3'- gUGCGUGAcauCGUgGAGCCGGcCGU- -5'
10756 3' -59.4 NC_002794.1 + 106963 0.68 0.715794
Target:  5'- aCACGCGuCgccucGCGCggCGGCCGGCAc -3'
miRNA:   3'- -GUGCGU-Gacau-CGUGgaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 107757 0.71 0.52947
Target:  5'- gCGCGcCGCUGgcuggAGCGCgCUCGcCCGGCGa -3'
miRNA:   3'- -GUGC-GUGACa----UCGUG-GAGCcGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 111243 1.08 0.001899
Target:  5'- aCACGCACUGUAGCACCUCGGCCGGCAg -3'
miRNA:   3'- -GUGCGUGACAUCGUGGAGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 113071 0.7 0.558414
Target:  5'- gCAgGUACUccuggAGCGCCUCGGCgaaCGGCGg -3'
miRNA:   3'- -GUgCGUGAca---UCGUGGAGCCG---GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 113153 0.67 0.781127
Target:  5'- gCGCGUcaGCgUGUAGCGCgCgCGGgCGGCGg -3'
miRNA:   3'- -GUGCG--UG-ACAUCGUG-GaGCCgGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 113395 0.66 0.827485
Target:  5'- gCAgGCGCUGcAGCACC-CGGagcugguccagcacgUCGGCGu -3'
miRNA:   3'- -GUgCGUGACaUCGUGGaGCC---------------GGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 113875 0.67 0.743424
Target:  5'- gGCGCGCUcggccgcGgcGCGCgUCGGCgCGGUc -3'
miRNA:   3'- gUGCGUGA-------CauCGUGgAGCCG-GCCGu -5'
10756 3' -59.4 NC_002794.1 + 114189 0.74 0.363503
Target:  5'- cCAgGCGCaGcGGCGCCaCGGCCGGCGu -3'
miRNA:   3'- -GUgCGUGaCaUCGUGGaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 114538 0.68 0.715794
Target:  5'- cCGCGCgaGCUGcgcgAGCuguuCUUCGGCCaGGCGc -3'
miRNA:   3'- -GUGCG--UGACa---UCGu---GGAGCCGG-CCGU- -5'
10756 3' -59.4 NC_002794.1 + 116062 0.68 0.706126
Target:  5'- aGCGCgACUGgggucgcggAGCG-CUCGGCgCGGCGg -3'
miRNA:   3'- gUGCG-UGACa--------UCGUgGAGCCG-GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 118727 0.69 0.657066
Target:  5'- gCGCGUACUGggcGCugCUCGGCgcgcucaGGCc -3'
miRNA:   3'- -GUGCGUGACau-CGugGAGCCGg------CCGu -5'
10756 3' -59.4 NC_002794.1 + 119688 0.68 0.725396
Target:  5'- gGCGU-CUccGGCugCUgGGCCGGCGg -3'
miRNA:   3'- gUGCGuGAcaUCGugGAgCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 120853 0.73 0.412024
Target:  5'- uGCGCgGCcGUcguccAGCGCCUCGGCUGGUg -3'
miRNA:   3'- gUGCG-UGaCA-----UCGUGGAGCCGGCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.