miRNA display CGI


Results 61 - 80 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10756 3' -59.4 NC_002794.1 + 121944 0.7 0.606541
Target:  5'- gACGCGCUGaucgAGCGCCUggagcgcuccgugCGGCuCGGUc -3'
miRNA:   3'- gUGCGUGACa---UCGUGGA-------------GCCG-GCCGu -5'
10756 3' -59.4 NC_002794.1 + 123556 0.66 0.790025
Target:  5'- cCGCGgGCUGUucgccuucgAGCGCCaCGGCCGccgcccguGCAg -3'
miRNA:   3'- -GUGCgUGACA---------UCGUGGaGCCGGC--------CGU- -5'
10756 3' -59.4 NC_002794.1 + 126123 0.66 0.824203
Target:  5'- -cCGCGCUcGUcuGCGCCgguuucUGGCCGGCc -3'
miRNA:   3'- guGCGUGA-CAu-CGUGGa-----GCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 126253 0.67 0.762963
Target:  5'- gGCGCGCgagGUcGGCGgCU-GGCUGGCGg -3'
miRNA:   3'- gUGCGUGa--CA-UCGUgGAgCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 126423 0.68 0.686621
Target:  5'- uCugGCuGCUGgucgaggugugGGCGCCUCGGCCcuggguccGGCu -3'
miRNA:   3'- -GugCG-UGACa----------UCGUGGAGCCGG--------CCGu -5'
10756 3' -59.4 NC_002794.1 + 126595 0.67 0.734922
Target:  5'- --gGgACUG-AGCGCCgaGGCCGGCGc -3'
miRNA:   3'- gugCgUGACaUCGUGGagCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 134295 0.68 0.725396
Target:  5'- aGCGCcucuucgaucgGCUGUGuCGCCUCGcGCCGGa- -3'
miRNA:   3'- gUGCG-----------UGACAUcGUGGAGC-CGGCCgu -5'
10756 3' -59.4 NC_002794.1 + 138438 0.72 0.47341
Target:  5'- -cCGCGgUGgcggcGGCGCCUCGGCCuGCGa -3'
miRNA:   3'- guGCGUgACa----UCGUGGAGCCGGcCGU- -5'
10756 3' -59.4 NC_002794.1 + 141305 0.67 0.781127
Target:  5'- gGCGCGCcGgcgacGGCACCggcgUCGGCuCGGUg -3'
miRNA:   3'- gUGCGUGaCa----UCGUGG----AGCCG-GCCGu -5'
10756 3' -59.4 NC_002794.1 + 141439 0.67 0.781127
Target:  5'- gGCGC-CgggGGCGCCgggagCGGCgCGGCGu -3'
miRNA:   3'- gUGCGuGacaUCGUGGa----GCCG-GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 145569 0.69 0.657066
Target:  5'- uCGCGgACg--AGCGCCgacggagcggCGGCCGGCu -3'
miRNA:   3'- -GUGCgUGacaUCGUGGa---------GCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 145777 0.68 0.676802
Target:  5'- cCACGCGgaGUcGUcCC-CGGCCGGCu -3'
miRNA:   3'- -GUGCGUgaCAuCGuGGaGCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 151633 0.68 0.706126
Target:  5'- --gGCACU-UGGCucGCCgcCGGCCGGCAc -3'
miRNA:   3'- gugCGUGAcAUCG--UGGa-GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 155671 0.68 0.675817
Target:  5'- aGCGCAgauacucCUGUGGCAgaUCGGCuCGGUg -3'
miRNA:   3'- gUGCGU-------GACAUCGUggAGCCG-GCCGu -5'
10756 3' -59.4 NC_002794.1 + 179823 0.66 0.824203
Target:  5'- cCGCGCACUcGUcG-GCCUCGGUCaGCGu -3'
miRNA:   3'- -GUGCGUGA-CAuCgUGGAGCCGGcCGU- -5'
10756 3' -59.4 NC_002794.1 + 182537 0.7 0.568165
Target:  5'- aGCGCggcaGCgacuGCGCCgCGGCCGGCAc -3'
miRNA:   3'- gUGCG----UGacauCGUGGaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 186278 0.73 0.420492
Target:  5'- cCugGCGCgGcGGCACCgCGGCCaGGCGg -3'
miRNA:   3'- -GugCGUGaCaUCGUGGaGCCGG-CCGU- -5'
10756 3' -59.4 NC_002794.1 + 188344 0.7 0.577958
Target:  5'- gGCgGCGCcGUcGCGCCcgucCGGCCGGCGg -3'
miRNA:   3'- gUG-CGUGaCAuCGUGGa---GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 190197 0.66 0.824203
Target:  5'- cCACGCGCUccAGCGCCgcgCGcacccGCCgGGCGc -3'
miRNA:   3'- -GUGCGUGAcaUCGUGGa--GC-----CGG-CCGU- -5'
10756 3' -59.4 NC_002794.1 + 194107 0.72 0.464353
Target:  5'- aCACGUGCUGcGGCACCgcgcgcaCGGCUgaGGCAg -3'
miRNA:   3'- -GUGCGUGACaUCGUGGa------GCCGG--CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.