miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10756 3' -59.4 NC_002794.1 + 72214 0.66 0.815886
Target:  5'- gCGgGCGCUGUcggaAGaaCACgaUGGCCGGCAc -3'
miRNA:   3'- -GUgCGUGACA----UC--GUGgaGCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 190197 0.66 0.824203
Target:  5'- cCACGCGCUccAGCGCCgcgCGcacccGCCgGGCGc -3'
miRNA:   3'- -GUGCGUGAcaUCGUGGa--GC-----CGG-CCGU- -5'
10756 3' -59.4 NC_002794.1 + 126123 0.66 0.824203
Target:  5'- -cCGCGCUcGUcuGCGCCgguuucUGGCCGGCc -3'
miRNA:   3'- guGCGUGA-CAu-CGUGGa-----GCCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 179823 0.66 0.824203
Target:  5'- cCGCGCACUcGUcG-GCCUCGGUCaGCGu -3'
miRNA:   3'- -GUGCGUGA-CAuCgUGGAGCCGGcCGU- -5'
10756 3' -59.4 NC_002794.1 + 57670 0.66 0.825026
Target:  5'- uCACGCAcCUGcccauggacauccuGCACCUCGGCgagaagaacgUGGCGc -3'
miRNA:   3'- -GUGCGU-GACau------------CGUGGAGCCG----------GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 23954 0.66 0.802256
Target:  5'- gGCGCACU-UGGCuCCgagccagcggcgaGGCCGGCGc -3'
miRNA:   3'- gUGCGUGAcAUCGuGGag-----------CCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 70896 0.66 0.790025
Target:  5'- aGCGCcagGUcggugAGCACgUCGGCCaGGCGa -3'
miRNA:   3'- gUGCGugaCA-----UCGUGgAGCCGG-CCGU- -5'
10756 3' -59.4 NC_002794.1 + 36503 0.67 0.772104
Target:  5'- aGCGCAC-----CACCUCGGCCaGCGu -3'
miRNA:   3'- gUGCGUGacaucGUGGAGCCGGcCGU- -5'
10756 3' -59.4 NC_002794.1 + 126253 0.67 0.762963
Target:  5'- gGCGCGCgagGUcGGCGgCU-GGCUGGCGg -3'
miRNA:   3'- gUGCGUGa--CA-UCGUgGAgCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 58644 0.67 0.772104
Target:  5'- cCACGCAgCUGggcgacgGGCugCUgCaGCCGGCc -3'
miRNA:   3'- -GUGCGU-GACa------UCGugGA-GcCGGCCGu -5'
10756 3' -59.4 NC_002794.1 + 113153 0.67 0.781127
Target:  5'- gCGCGUcaGCgUGUAGCGCgCgCGGgCGGCGg -3'
miRNA:   3'- -GUGCG--UG-ACAUCGUG-GaGCCgGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 26083 0.67 0.781127
Target:  5'- cCACGCGggGcAGCGCCgaCGGCCccGGCGa -3'
miRNA:   3'- -GUGCGUgaCaUCGUGGa-GCCGG--CCGU- -5'
10756 3' -59.4 NC_002794.1 + 141439 0.67 0.781127
Target:  5'- gGCGC-CgggGGCGCCgggagCGGCgCGGCGu -3'
miRNA:   3'- gUGCGuGacaUCGUGGa----GCCG-GCCGU- -5'
10756 3' -59.4 NC_002794.1 + 57598 0.67 0.781127
Target:  5'- cCGCGCGC-GUGGcCACCgagaaggCGGCCGaCGa -3'
miRNA:   3'- -GUGCGUGaCAUC-GUGGa------GCCGGCcGU- -5'
10756 3' -59.4 NC_002794.1 + 141305 0.67 0.781127
Target:  5'- gGCGCGCcGgcgacGGCACCggcgUCGGCuCGGUg -3'
miRNA:   3'- gUGCGUGaCa----UCGUGG----AGCCG-GCCGu -5'
10756 3' -59.4 NC_002794.1 + 55626 0.66 0.790025
Target:  5'- uGCaCGCUGgccAGCACgCg-GGCCGGCAg -3'
miRNA:   3'- gUGcGUGACa--UCGUG-GagCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 45366 0.66 0.790025
Target:  5'- aCACGCACgUGcgcgAGC-CCgUCGGCCacacgGGCAc -3'
miRNA:   3'- -GUGCGUG-ACa---UCGuGG-AGCCGG-----CCGU- -5'
10756 3' -59.4 NC_002794.1 + 57392 0.66 0.790025
Target:  5'- cUACGUcaccgGCUccGGCGCCcgcgUGGCCGGCGu -3'
miRNA:   3'- -GUGCG-----UGAcaUCGUGGa---GCCGGCCGU- -5'
10756 3' -59.4 NC_002794.1 + 78666 0.66 0.790025
Target:  5'- uCugGCACUc---CACCUCGGCCgccGGCc -3'
miRNA:   3'- -GugCGUGAcaucGUGGAGCCGG---CCGu -5'
10756 3' -59.4 NC_002794.1 + 93995 0.66 0.790025
Target:  5'- gCGCGgACgccGGCGCCggcggCgGGCCGGCGg -3'
miRNA:   3'- -GUGCgUGacaUCGUGGa----G-CCGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.